Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network

A Kahraman, T Karakulak, D Szklarczyk… - Scientific reports, 2020 - nature.com
Under normal conditions, cells of almost all tissue types express the same predominant
canonical transcript isoform at each gene locus. In cancer, however, splicing regulation is …

The landscape of isoform switches in human cancers

K Vitting-Seerup, A Sandelin - Molecular Cancer Research, 2017 - AACR
Alternative usage of transcript isoforms from the same gene has been hypothesized as an
important feature in cancers. However, differential usage of gene transcripts between …

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer

E Sebestyén, M Zawisza, E Eyras - Nucleic acids research, 2015 - academic.oup.com
The determination of the alternative splicing isoforms expressed in cancer is fundamental for
the development of tumor-specific molecular targets for prognosis and therapy, but it is …

Identification of mRNA isoform switching in breast cancer

W Zhao, KA Hoadley, JS Parker, CM Perou - BMC genomics, 2016 - Springer
Background Alternative splicing provides a major mechanism to generate protein diversity.
Increasing evidence suggests a link of dysregulation of splicing associated with cancer …

Transcriptome instability as a molecular pan-cancer characteristic of carcinomas

A Sveen, B Johannessen, MR Teixeira, RA Lothe… - BMC genomics, 2014 - Springer
Background We have previously proposed transcriptome instability as a genome-wide, pre-
mRNA splicing-related characteristic of colorectal cancer. Here, we explore the hypothesis …

Explaining cancer type specific mutations with transcriptomic and epigenomic features in normal tissues

KL Tiong, CH Yeang - Scientific Reports, 2018 - nature.com
Most cancer driver genes are involved in generic cellular processes such as DNA repair, cell
proliferation and cell adhesion, yet their mutations are often confined to specific cancer …

Revealing the determinants of widespread alternative splicing perturbation in cancer

Y Li, N Sahni, R Pancsa, DJ McGrail, J Xu, X Hua… - Cell reports, 2017 - cell.com
It is increasingly appreciated that alternative splicing plays a key role in generating
functional specificity and diversity in cancer. However, the mechanisms by which cancer …

The functional impact of alternative splicing in cancer

H Climente-González, E Porta-Pardo, A Godzik… - Cell reports, 2017 - cell.com
Alternative splicing changes are frequently observed in cancer and are starting to be
recognized as important signatures for tumor progression and therapy. However, their …

Genome-wide analysis reveals the association between alternative splicing and DNA methylation across human solid tumors

X Sun, Y Tian, J Wang, Z Sun, Y Zhu - BMC medical genomics, 2020 - Springer
Background Dysregulation of alternative splicing (AS) is a critical signature of cancer.
However, the regulatory mechanisms of cancer-specific AS events, especially the impact of …

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

E Sebestyén, B Singh, B Miñana, A Pagès… - Genome …, 2016 - genome.cshlp.org
Alternative splicing is regulated by multiple RNA-binding proteins and influences the
expression of most eukaryotic genes. However, the role of this process in human disease …