Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
Structural variants (SVs) represent a major source of genetic diversity and are related to
numerous agronomic traits and evolutionary events; however, their comprehensive …
numerous agronomic traits and evolutionary events; however, their comprehensive …
Graph-based pan-genomes: increased opportunities in plant genomics
S Wang, YQ Qian, RP Zhao, LL Chen… - Journal of …, 2023 - academic.oup.com
Due to the development of sequencing technology and the great reduction in sequencing
costs, an increasing number of plant genomes have been assembled, and numerous …
costs, an increasing number of plant genomes have been assembled, and numerous …
Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber
Structural variations (SVs) represent a major source of genetic diversity. However, the
functional impact and formation mechanisms of SVs in plant genomes remain largely …
functional impact and formation mechanisms of SVs in plant genomes remain largely …
The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development
Germplasm collections are a crucial resource to conserve natural genetic diversity and
provide a source of novel traits essential for sustained crop improvement. Optimal collection …
provide a source of novel traits essential for sustained crop improvement. Optimal collection …
A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity
Most fruits in our daily diet are the products of domestication and breeding. Here we report a
map of genome variation for a major fruit that encompasses∼ 3.6 million variants, generated …
map of genome variation for a major fruit that encompasses∼ 3.6 million variants, generated …
The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants
R Wóycicki, J Witkowicz, P Gawroński, J Dąbrowska… - PloS one, 2011 - journals.plos.org
Cucumber (Cucumis sativus L.), a widely cultivated crop, has originated from Eastern
Himalayas and secondary domestication regions includes highly divergent climate …
Himalayas and secondary domestication regions includes highly divergent climate …
A high-density genetic map for anchoring genome sequences and identifying QTLs associated with dwarf vine in pumpkin (Cucurbita maxima Duch.)
G Zhang, Y Ren, H Sun, S Guo, F Zhang, J Zhang… - BMC genomics, 2015 - Springer
Abstract Background Pumpkin (Cucurbita maxima Duch.) is an economically important crop
belonging to the Cucurbitaceae family. However, very few genomic and genetic resources …
belonging to the Cucurbitaceae family. However, very few genomic and genetic resources …
An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing
Q Wei, Y Wang, X Qin, Y Zhang, Z Zhang, J Wang, J Li… - BMC genomics, 2014 - Springer
Abstract Background Cucumber, Cucumis sativus L., is an economically important vegetable
crop which is processed or consumed fresh worldwide. However, the narrow genetic base in …
crop which is processed or consumed fresh worldwide. However, the narrow genetic base in …
Chromosome rearrangements during domestication of cucumber as revealed by high‐density genetic mapping and draft genome assembly
L Yang, DH Koo, Y Li, X Zhang, F Luan… - The Plant …, 2012 - Wiley Online Library
Cucumber, Cucumis sativus L. is the only taxon with 2n= 2x= 14 chromosomes in the genus
Cucumis. It consists of two cross‐compatible botanical varieties: the cultivated C. sativus var …
Cucumis. It consists of two cross‐compatible botanical varieties: the cultivated C. sativus var …
An integrated genetic and cytogenetic map of the cucumber genome
The Cucurbitaceae includes important crops such as cucumber, melon, watermelon, squash
and pumpkin. However, few genetic and genomic resources are available for plant …
and pumpkin. However, few genetic and genomic resources are available for plant …
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