Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …

Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …

Large studies profiling microbial communities and their association with healthy or disease
phenotypes are now commonplace. Processed data from many of these studies are publicly …

Microbiomes are ubiquitous and are found in the ocean, the soil, and in/on other living
organisms. Changes in the microbiome can impact the health of the environmental niche in …

Abstract MGnify (http://www. ebi. ac. uk/metagenomics) provides a free to use platform for the
assembly, analysis and archiving of microbiome data derived from sequencing microbial …

The number of metagenomes is increasing rapidly. However, current methods for
metagenomic analysis are limited by their capability for in-depth data mining among a large …

Mapping metagenome reads to reference databases is the standard approach for assessing
microbial taxonomic and functional diversity from metagenomic data. However, public …

Background Given the lack of a complete and comprehensive library of microbial reference
genomes, determining the functional profile of diverse microbial communities is challenging …

Abstract The National Microbiome Data Collaborative (NMDC) Data Portal (https://data.
microbiomedata. org) supports microbiome multi-omics data exploration and access through …

Metagenomic and metatranscriptomic sequencing approaches are more frequently being
used to link microbiota to important diseases and ecological changes. Many analyses have …