[HTML][HTML] Increasing Signal Specificity of the TOL Network of Pseudomonas putida mt-2 by Rewiring the Connectivity of the Master Regulator XylR

A de Las Heras, S Fraile, V de Lorenzo - 2012 - journals.plos.org
Prokaryotic transcription factors (TFs) that bind small xenobiotic molecules (eg, TFs that
drive genes that respond to environmental pollutants) often display a promiscuous effector …

Inferring the genetic network of m‐xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt‐2

F Velázquez, V Parro, V de Lorenzo - Molecular microbiology, 2005 - Wiley Online Library
A subgenomic array of structural and regulatory genes of the TOL plasmid pWW0 of
Pseudomonas putida mt‐2 has been constructed to sort out the interplay between m‐xylene …

À la carte transcriptional regulators: unlocking responses of the prokaryotic enhancer‐binding protein XylR to non‐natural effectors

J Garmendia, D Devos, A Valencia… - Molecular …, 2001 - Wiley Online Library
To investigate the activation mechanism of the enhancer‐binding protein XylR encoded by
the TOL plasmid of Pseudomonas putida mt‐2, a combinatorial library was generated …

[HTML][HTML] The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m …

R Silva-Rocha, H de Jong, J Tamames… - BMC Systems Biology, 2011 - Springer
Background The genetic network of the TOL plasmid pWW0 of the soil bacterium
Pseudomonas putida mt-2 for catabolism of m-xylene is an archetypal model for …

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt‐2 exposed to m‐xylene

R Silva‐Rocha, V de Lorenzo - Molecular microbiology, 2012 - Wiley Online Library
The expression dynamics of the catabolic promoters of the TOL plasmid pWW0 has been
examined in single cells of Pseudomonas putida mt‐2 exposed to m‐xylene. To this end, we …

Cooperative amino acid changes shift the response of the σ54‐dependent regulator XylR from natural m‐xylene towards xenobiotic 2,4‐dinitrotoluene

A de Las Heras, V de Lorenzo - Molecular microbiology, 2011 - Wiley Online Library
XylR is a σ54‐dependent transcriptional factor of Pseudomonas putida that activates the Pu
promoter of the TOL plasmid upon binding its natural effector, m‐xylene. The search for …

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2

R Silva-Rocha, D Pérez-Pantoja… - The ISME journal, 2013 - academic.oup.com
The first mechanistic description of gene expression control was proposed by Jacob and
Monod (1961) for the lac operon of E. coli. The first version of the model contemplated …

The TOL network of Pseudomonas putida mt‐2 processes multiple environmental inputs into a narrow response space

R Silva‐Rocha, V de Lorenzo - Environmental microbiology, 2013 - Wiley Online Library
The TOL system encoded by plasmid pWW0 of P seudomonas putida mt‐2 is able to sense
a large number of both exogenous and endogenous signals as inputs for the genetic and …

Emergence of novel functions in transcriptional regulators by regression to stem protein types

TC Galvão, M Mencía, V De Lorenzo - Molecular microbiology, 2007 - Wiley Online Library
Evolutionary expansion of metabolic networks entails the emergence of regulatory factors
that become sensitive to new chemical species. A dedicated genetic system was developed …

Genetic evidence that the XylS regulator of the Pseudomonas TOL meta operon controls the Pm promoter through weak DNA-protein interactions

B Kessler, M Herrero, KN Timmis… - Journal of …, 1994 - Am Soc Microbiol
The activation of the Pm promoter of the meta operon of the TOL plasmid of Pseudomonas
putida by its cognate XylS activator protein in the presence and absence of benzoate …