Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

E Sebestyén, B Singh, B Miñana, A Pagès… - Genome …, 2016 - genome.cshlp.org
Alternative splicing is regulated by multiple RNA-binding proteins and influences the
expression of most eukaryotic genes. However, the role of this process in human disease …

Identification of recurrent regulated alternative splicing events across human solid tumors

M Danan-Gotthold, R Golan-Gerstl… - Nucleic acids …, 2015 - academic.oup.com
Cancer is a complex disease that involves aberrant gene expression regulation.
Discriminating the modified expression patterns driving tumor biology from the many that …

Alternative splicing in cancer: noise, functional, or systematic?

RI Skotheim, M Nees - The international journal of biochemistry & cell …, 2007 - Elsevier
Pre-messenger RNA splicing is a fine-tuned process that generates multiple functional
variants from individual genes. Various cell types and developmental stages regulate …

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer

E Sebestyén, M Zawisza, E Eyras - Nucleic acids research, 2015 - academic.oup.com
The determination of the alternative splicing isoforms expressed in cancer is fundamental for
the development of tumor-specific molecular targets for prognosis and therapy, but it is …

The cancer spliceome: reprograming of alternative splicing in cancer

E El Marabti, I Younis - Frontiers in molecular biosciences, 2018 - frontiersin.org
Alternative splicing allows for the expression of multiple RNA and protein isoforms from one
gene, making it a major contributor to transcriptome and proteome diversification in …

Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes

A Sveen, S Kilpinen, A Ruusulehto, RA Lothe… - Oncogene, 2016 - nature.com
Alternative splicing is a widespread process contributing to structural transcript variation and
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …

[HTML][HTML] Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins

SC Huelga, AQ Vu, JD Arnold, TY Liang, PP Liu… - Cell reports, 2012 - cell.com
Understanding how RNA binding proteins control the splicing code is fundamental to human
biology and disease. Here, we present a comprehensive study to elucidate how …

A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis

C He, F Zhou, Z Zuo, H Cheng, R Zhou - PloS one, 2009 - journals.plos.org
Background Alternative pre-mRNA splicing (AS) plays a central role in generating complex
proteomes and influences development and disease. However, the regulation and etiology …

The functional impact of alternative splicing in cancer

H Climente-González, E Porta-Pardo, A Godzik… - Cell reports, 2017 - cell.com
Alternative splicing changes are frequently observed in cancer and are starting to be
recognized as important signatures for tumor progression and therapy. However, their …

Widespread intron retention diversifies most cancer transcriptomes

H Dvinge, RK Bradley - Genome medicine, 2015 - Springer
Background Somatic mutations affecting components of the RNA splicing machinery occur
with high frequencies across many tumor types. These mutations give rise to distinct …