Smchd1-dependent and-independent pathways determine developmental dynamics of CpG island methylation on the inactive X chromosome

AV Gendrel, A Apedaile, H Coker, A Termanis… - Developmental cell, 2012 - cell.com
X chromosome inactivation involves multiple levels of chromatin modification, established
progressively and in a stepwise manner during early development. The chromosomal …

Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes

AV Gendrel, YA Tang, M Suzuki, J Godwin… - … and cellular biology, 2013 - Taylor & Francis
The Smchd1 gene encodes a large protein with homology to the SMC family of proteins
involved in chromosome condensation and cohesion. Previous studies have found that …

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

PA Ginno, PL Lott, HC Christensen, I Korf, F Chédin - Molecular cell, 2012 - cell.com
CpG islands (CGIs) function as promoters for approximately 60% of human genes. Most of
these elements remain protected from CpG methylation, a prevalent epigenetic modification …

The Mbd1-Atf7ip-Setdb1 pathway contributes to the maintenance of X chromosome inactivation

A Minkovsky, A Sahakyan, E Rankin-Gee… - Epigenetics & …, 2014 - Springer
Background X chromosome inactivation (XCI) is a developmental program of
heterochromatin formation that initiates during early female mammalian embryonic …

Developmentally programmed 3′ CpG island methylation confers tissue-and cell-type-specific transcriptional activation

DH Yu, C Ware, RA Waterland, J Zhang… - … and cellular biology, 2013 - Taylor & Francis
During development, a small but significant number of CpG islands (CGIs) become
methylated. The timing of developmentally programmed CGI methylation and associated …

[HTML][HTML] CpG islands recruit a histone H3 lysine 36 demethylase

NP Blackledge, JC Zhou, MY Tolstorukov, AM Farcas… - Molecular cell, 2010 - cell.com
In higher eukaryotes, up to 70% of genes have high levels of nonmethylated
cytosine/guanine base pairs (CpGs) surrounding promoters and gene regulatory units …

DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease

DM Jeziorska, RJS Murray… - Proceedings of the …, 2017 - National Acad Sciences
The human genome contains∼ 30,000 CpG islands (CGIs). While CGIs associated with
promoters nearly always remain unmethylated, many of the∼ 9,000 CGIs lying within gene …

A novel CpG island set identifies tissue-specific methylation at developmental gene loci

R Illingworth, A Kerr, D DeSousa, H Jørgensen… - PLoS …, 2008 - journals.plos.org
CpG islands (CGIs) are dense clusters of CpG sequences that punctuate the CpG-deficient
human genome and associate with many gene promoters. As CGIs also differ from bulk …

[HTML][HTML] Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation

AL Hughes, JR Kelley, RJ Klose - Biochimica et Biophysica Acta (BBA) …, 2020 - Elsevier
The precise regulation of gene transcription is required to establish and maintain cell type-
specific gene expression programs during multicellular development. In addition to …

CpG island chromatin is shaped by recruitment of ZF-CxxC proteins

NP Blackledge, JP Thomson… - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
Most mammalian gene promoters are embedded within genomic regions called CpG
islands, characterized by elevated levels of nonmethylated CpG dinucleotides. Here, we …