A Strategy for Studying Epigenetic Diversity in Natural Populations: Proof of Concept in Poplar and Oak
I Lesur, O Rogier, MD Sow, C Boury… - Journal of …, 2024 - academic.oup.com
These last 20 years, several techniques have been developed for quantifying DNA
methylation, the most studied epigenetic marks in eukaryotes, including the gold standard …
methylation, the most studied epigenetic marks in eukaryotes, including the gold standard …
Population epigenetics: DNA methylation in the plant omics era
J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …
underlying the establishment and maintenance of DNA methylation are well understood …
Locus-specific DNA methylation analysis and applications to plants
A How-Kit, E Teyssier, JF Deleuze, P Gallusci - Plant epigenetics, 2017 - Springer
In contrast to mammals where DNA methylation occurs near exclusively at CG dinucleotides,
all cytosines of plant genomes can be methylated irrespective to the sequence context …
all cytosines of plant genomes can be methylated irrespective to the sequence context …
[HTML][HTML] Herbivory induced methylation changes in the Lombardy poplar: A comparison of results obtained by epiGBS and WGBS
DNA cytosine methylation is an epigenetic mechanism involved in regulation of plant
responses to biotic and abiotic stress and its ability to change can vary with the sequence …
responses to biotic and abiotic stress and its ability to change can vary with the sequence …
Species‐wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients
PF Gugger, S Fitz‐Gibbon, M PellEgrini… - Molecular …, 2016 - Wiley Online Library
DNA methylation in plants affects transposon silencing, transcriptional regulation and thus
phenotypic variation. One unanswered question is whether DNA methylation could be …
phenotypic variation. One unanswered question is whether DNA methylation could be …
[HTML][HTML] Inter-individual variation in DNA methylation is largely restricted to tissue-specific differentially methylated regions in maize
M Lauria, RA Echegoyen-Nava, D Rodríguez-Ríos… - BMC Plant …, 2017 - Springer
Background Variation in DNA methylation across distinct genetic populations, or in response
to specific biotic or abiotic stimuli, has typically been studied in leaf DNA from pooled …
to specific biotic or abiotic stimuli, has typically been studied in leaf DNA from pooled …
Polyploidy and DNA methylation: new tools available
A Salmon, ML Ainouche - 2010 - Wiley Online Library
Most plant species are recent or ancient polyploids (displaying at least one round of genome
duplication in their history). Cultivated species (eg wheat, cotton, canola, sugarcane, coffee) …
duplication in their history). Cultivated species (eg wheat, cotton, canola, sugarcane, coffee) …
[PDF][PDF] Covering your bases: inheritance of DNA methylation in plant genomes
CE Niederhuth, RJ Schmitz - Molecular plant, 2014 - cell.com
Cytosine methylation is an important base modification that is inherited across mitotic and
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics
The expanding scope and scale of next generation sequencing experiments in ecological
plant epigenetics brings new challenges for computational analysis. Existing tools built for …
plant epigenetics brings new challenges for computational analysis. Existing tools built for …
CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing
Cytosine methylation is a hallmark of epigenetic information in the DNA of many fungi,
vertebrates and plants. The technique of bisulphite genomic sequencing reveals the …
vertebrates and plants. The technique of bisulphite genomic sequencing reveals the …