A Strategy for Studying Epigenetic Diversity in Natural Populations: Proof of Concept in Poplar and Oak

I Lesur, O Rogier, MD Sow, C Boury… - Journal of …, 2024 - academic.oup.com
These last 20 years, several techniques have been developed for quantifying DNA
methylation, the most studied epigenetic marks in eukaryotes, including the gold standard …

Population epigenetics: DNA methylation in the plant omics era

J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …

Locus-specific DNA methylation analysis and applications to plants

A How-Kit, E Teyssier, JF Deleuze, P Gallusci - Plant epigenetics, 2017 - Springer
In contrast to mammals where DNA methylation occurs near exclusively at CG dinucleotides,
all cytosines of plant genomes can be methylated irrespective to the sequence context …

[HTML][HTML] Herbivory induced methylation changes in the Lombardy poplar: A comparison of results obtained by epiGBS and WGBS

AN Troyee, C Peña-Ponton, M Medrano… - Plos one, 2023 - journals.plos.org
DNA cytosine methylation is an epigenetic mechanism involved in regulation of plant
responses to biotic and abiotic stress and its ability to change can vary with the sequence …

Species‐wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients

PF Gugger, S Fitz‐Gibbon, M PellEgrini… - Molecular …, 2016 - Wiley Online Library
DNA methylation in plants affects transposon silencing, transcriptional regulation and thus
phenotypic variation. One unanswered question is whether DNA methylation could be …

[HTML][HTML] Inter-individual variation in DNA methylation is largely restricted to tissue-specific differentially methylated regions in maize

M Lauria, RA Echegoyen-Nava, D Rodríguez-Ríos… - BMC Plant …, 2017 - Springer
Background Variation in DNA methylation across distinct genetic populations, or in response
to specific biotic or abiotic stimuli, has typically been studied in leaf DNA from pooled …

Polyploidy and DNA methylation: new tools available

A Salmon, ML Ainouche - 2010 - Wiley Online Library
Most plant species are recent or ancient polyploids (displaying at least one round of genome
duplication in their history). Cultivated species (eg wheat, cotton, canola, sugarcane, coffee) …

[PDF][PDF] Covering your bases: inheritance of DNA methylation in plant genomes

CE Niederhuth, RJ Schmitz - Molecular plant, 2014 - cell.com
Cytosine methylation is an important base modification that is inherited across mitotic and
meiotic cell divisions in plant genomes. Heritable methylation variants can contribute to …

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

A Nunn, SN Can, C Otto, M Fasold… - NAR genomics and …, 2021 - academic.oup.com
The expanding scope and scale of next generation sequencing experiments in ecological
plant epigenetics brings new challenges for computational analysis. Existing tools built for …

CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing

J Hetzl, AM Foerster, G Raidl, OM Scheid - The Plant Journal, 2007 - Wiley Online Library
Cytosine methylation is a hallmark of epigenetic information in the DNA of many fungi,
vertebrates and plants. The technique of bisulphite genomic sequencing reveals the …