[HTML][HTML] Functional networks of the human bromodomain-containing proteins

C Gao, KC Glass, S Frietze - Frontiers in Bioinformatics, 2022 - frontiersin.org
Background: Bromodomains are a structurally conserved epigenetic reader domain that
bind to acetylated lysine residues in both histone and non-histone proteins. Bromodomain …

Multiple structural clustering of Bromodomains of the Bromo and extra terminal (BET) proteins highlights subtle differences in their structural dynamics and acetylated …

S Lukman, Z Aung, K Sim - Procedia Computer Science, 2015 - Elsevier
BET proteins are epigenetic readers whose deregulation results in cancer and inflammation.
We show that BET proteins (BRD2, BRD3, BRD4 and BRDT) are globally similar with subtle …

[HTML][HTML] Unveiling crucial proteins in zone 2 of the human protein interaction network: Implications for cancer research and therapeutic targeting

E Fadhal - The Open Bioinformatics Journal, 2023 - openbioinformaticsjournal.com
Background: Protein-protein interaction networks are of great importance for understanding
the complexity of biological processes and diseases, including cancer. However, detecting …

[HTML][HTML] mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome

JKK Low, K Patel, N Jones, P Solomon… - Journal of Biological …, 2023 - ASBMB
Bromodomains (BDs) regulate gene expression by recognizing protein motifs containing
acetyllysine. Although originally characterized as histone-binding proteins, it has since …

Association analysis of hepatocellular carcinoma‐related hub proteins and hub genes

X Zhang, B Zhang, Y Zhang… - PROTEOMICS–Clinical …, 2023 - Wiley Online Library
Purpose Hepatocellular carcinoma (HCC) is one of the most common cancers worldwide.
The occurrence and development of HCC are closely related to epigenetic modifications …

[HTML][HTML] Bromodomain (BrD) Family Members as Regulators of Cancer Stemness—A Comprehensive Review

P Czerwinska, AA Mackiewicz - International Journal of Molecular …, 2023 - mdpi.com
Epigenetic mechanisms involving DNA methylation and chromatin modifications have
emerged as critical facilitators of cancer heterogeneity, substantially affecting cancer …

[PDF][PDF] Mining topological structures of protein-protein interaction networks for human brain-specific genes

WJ Cui, XJ Gong, H Yu, XC Zhang - Genet. Mol. Res, 2015 - geneticsmr.com
Compared to other placental mammals, humans have unique thinking and cognitive abilities
because of their developed cerebral cortex composed of billions of neurons and synaptic …

PepCyber: P∼ PEP: a database of human protein–protein interactions mediated by phosphoprotein-binding domains

W Gong, D Zhou, Y Ren, Y Wang, Z Zuo… - Nucleic acids …, 2008 - academic.oup.com
Phosphoprotein-binding domains (PPBDs) mediate many important cellular and molecular
processes. Ten PPBDs have been known to exist in the human proteome, namely, 14-3-3 …

[HTML][HTML] Transcriptional regulation of BRD7 expression by Sp1 and c-Myc

H Liu, M Zhou, X Luo, L Zhang, Z Niu, C Peng… - BMC molecular …, 2008 - Springer
Background Bromodomain is an evolutionally conserved domain that is found in proteins
strongly implicated in signal-dependent transcriptional regulation. Genetic alterations of …

Connectedness of PPI network neighborhoods identifies regulatory hub proteins

AD Fox, BJ Hescott, AC Blumer, DK Slonim - Bioinformatics, 2011 - academic.oup.com
Motivation: With the growing availability of high-throughput protein–protein interaction (PPI)
data, it has become possible to consider how a protein's local or global network …