OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
J Sun, F Lu, Y Luo, L Bie, L Xu, Y Wang - Nucleic acids research, 2023 - academic.oup.com
Advancements in comparative genomics research have led to a growing interest in studying
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …
OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species
L Xu, Z Dong, L Fang, Y Luo, Z Wei, H Guo… - Nucleic acids …, 2019 - academic.oup.com
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
Y Wang, D Coleman-Derr, G Chen… - Nucleic acids …, 2015 - academic.oup.com
Genome wide analysis of orthologous clusters is an important component of comparative
genomics studies. Identifying the overlap among orthologous clusters can enable us to …
genomics studies. Identifying the overlap among orthologous clusters can enable us to …
SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species
Defining syntenic relationships among orthologous gene clusters is a frequent undertaking
of biologists studying organismal evolution through comparative genomic approaches. With …
of biologists studying organismal evolution through comparative genomic approaches. With …
The quest for orthologs: finding the corresponding gene across genomes
A Kuzniar, RCHJ van Ham, S Pongor, JAM Leunissen - Trends in Genetics, 2008 - cell.com
Orthology is a key evolutionary concept in many areas of genomic research. It provides a
framework for subjects as diverse as the evolution of genomes, gene functions, cellular …
framework for subjects as diverse as the evolution of genomes, gene functions, cellular …
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
D Kuznetsov, F Tegenfeldt, M Manni… - Nucleic Acids …, 2023 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of genes in a diverse sampling of
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
RM Waterhouse, F Tegenfeldt, J Li… - Nucleic acids …, 2013 - academic.oup.com
The concept of orthology provides a foundation for formulating hypotheses on gene and
genome evolution, and thus forms the cornerstone of comparative genomics, phylogenomics …
genome evolution, and thus forms the cornerstone of comparative genomics, phylogenomics …
Inferring orthologs: open questions and perspectives
F Tekaia - Genomics Insights, 2016 - journals.sagepub.com
With the increasing number of sequenced genomes and their comparisons, the detection of
orthologs is crucial for reliable functional annotation and evolutionary analyses of genes and …
orthologs is crucial for reliable functional annotation and evolutionary analyses of genes and …
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
EV Kriventseva, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2019 - academic.oup.com
Abstract OrthoDB (https://www. orthodb. org) provides evolutionary and functional
annotations of orthologs. This update features a major scaling up of the resource coverage …
annotations of orthologs. This update features a major scaling up of the resource coverage …
i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
Comparative genomics is a powerful means to gain insight into the evolutionary processes
that shape the genomes of related species. As the number of sequenced genomes …
that shape the genomes of related species. As the number of sequenced genomes …