Fungal taxonomy and sequence-based nomenclature

R Lücking, MC Aime, B Robbertse, AN Miller… - Nature …, 2021 - nature.com
The identification and proper naming of microfungi, in particular plant, animal and human
pathogens, remains challenging. Molecular identification is becoming the default approach …

Fungal species concepts in the genomics era

J Xu - Genome, 2020 - cdnsciencepub.com
The 140 000 or so fungal species reported so far are heterogeneously defined based on
varying criteria such as morphological, physiological, mating, and (or) molecular features …

[HTML][HTML] Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

R Lücking, DL Hawksworth - IMA fungus, 2018 - Springer
There is urgent need for a formal nomenclature of sequence-based, voucherless Fungi,
given that environmental sequencing has accumulated more than one billion fungal ITS …

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

RH Nilsson, KH Larsson, AFS Taylor… - Nucleic acids …, 2019 - academic.oup.com
Abstract UNITE (https://unite. ut. ee/) is a web-based database and sequence management
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …

[HTML][HTML] Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon

M Thines, PW Crous, MC Aime, T Aoki, L Cai, KD Hyde… - IMA fungus, 2018 - Springer
The large number of species still to be discovered in fungi, together with an exponentially
growing number of environmental sequences that cannot be linked to known taxa, has …

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

DS Hibbett, A Ohman, D Glotzer, M Nuhn, P Kirk… - Fungal biology …, 2011 - Elsevier
Fungal taxonomy seeks to discover, describe, and classify all species of Fungi and provide
tools for their identification. About 100,000 fungal species have been described so far, but it …

Sequence-based classification and identification of Fungi

D Hibbett, K Abarenkov, U Kõljalg, M Öpik, B Chai… - Mycologia, 2016 - Taylor & Francis
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology …

[HTML][HTML] The Genera of Fungi: fixing the application of type species of generic names

PW Crous, A Giraldo, DL Hawksworth, V Robert… - IMA fungus, 2014 - Springer
To ensure a stable platform for fungal taxonomy, it is of paramount importance that the
genetic application of generic names be based on their DNA sequence data, and wherever …

[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

[HTML][HTML] The numbers of fungi: Contributions from traditional taxonomic studies and challenges of metabarcoding

C Phukhamsakda, RH Nilsson, CS Bhunjun… - Fungal diversity, 2022 - Springer
The global diversity of fungi has been estimated using several different approaches. There is
somewhere between 2–11 million estimated species, but the number of formally described …