Enhanced Detection and Genotyping of Disease-Associated Tandem Repeats Using HMMSTR and Targeted Long-Read Sequencing
K Van Deynze, C Mumm, CJ Maltby, JA Switzenberg… - medRxiv, 2024 - medrxiv.org
Tandem repeat sequences comprise approximately 8% of the human genome and are
linked to more than 50 neurodegenerative disorders. Accurate characterization of disease …
linked to more than 50 neurodegenerative disorders. Accurate characterization of disease …
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
I Stevanovski, SR Chintalaphani, H Gamaarachchi… - Science …, 2022 - science.org
More than 50 neurological and neuromuscular diseases are caused by short tandem repeat
(STR) expansions, with 37 different genes implicated to date. We describe the use of …
(STR) expansions, with 37 different genes implicated to date. We describe the use of …
TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data
Background Tandem repeat sequences are widespread in the human genome, and their
expansions cause multiple repeat-mediated disorders. Genome-wide discovery approaches …
expansions cause multiple repeat-mediated disorders. Genome-wide discovery approaches …
Detecting tandem repeat expansions using short-read sequencing for clinical use
Repeat expansion disorders are a unique class of genetic diseases caused by expansions
of short tandem repeats. Until recently, these pathogenic variations were detected with locus …
of short tandem repeats. Until recently, these pathogenic variations were detected with locus …
Genome-wide detection of short tandem repeat expansions by long-read sequencing
Background Short tandem repeat (STR), or “microsatellite”, is a tract of DNA in which a
specific motif (typically< 10 base pairs) is repeated multiple times. STRs are abundant …
specific motif (typically< 10 base pairs) is repeated multiple times. STRs are abundant …
Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
Tandemly repeated DNA is highly mutable and causes at least 31 diseases, but it is hard to
detect pathogenic repeat expansions genome-wide. Here, we report robust detection of …
detect pathogenic repeat expansions genome-wide. Here, we report robust detection of …
Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences
Tandem repeat (TR) expansion is the underlying cause of over 40 neurological disorders.
Long-read sequencing offers an exciting avenue over conventional technologies for …
Long-read sequencing offers an exciting avenue over conventional technologies for …
NanoSatellite: accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION
A De Roeck, W De Coster, L Bossaerts, R Cacace… - Genome biology, 2019 - Springer
Technological limitations have hindered the large-scale genetic investigation of tandem
repeats in disease. We show that long-read sequencing with a single Oxford Nanopore …
repeats in disease. We show that long-read sequencing with a single Oxford Nanopore …
Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data
RM Tankard, MF Bennett, P Degorski… - The American Journal of …, 2018 - cell.com
Repeat expansions cause more than 30 inherited disorders, predominantly neurogenetic.
These can present with overlapping clinical phenotypes, making molecular diagnosis …
These can present with overlapping clinical phenotypes, making molecular diagnosis …
Medically relevant tandem repeats in nanopore sequencing of control cohorts
W De Coster, I Hoijer, I Bruggeman, S D'Hert, M Melin… - medRxiv, 2024 - medrxiv.org
Research and diagnostics for medically relevant tandem repeats and repeat expansions are
hampered by the lack of population-scale databases. We attempt to fill this gap using our …
hampered by the lack of population-scale databases. We attempt to fill this gap using our …