Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids

X Jiang, Q Song, W Ye, ZJ Chen - Nature Ecology & Evolution, 2021 - nature.com
During evolution successful allopolyploids must overcome 'genome shock'between
hybridizing species but the underlying process remains elusive. Here, we report concerted …

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

J Wang, L Tian, HS Lee, NE Wei, H Jiang, B Watson… - Genetics, 2006 - academic.oup.com
Polyploidy has occurred throughout the evolutionary history of all eukaryotes and is
extremely common in plants. Reunification of the evolutionarily divergent genomes in …

Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners

PL Chang, BP Dilkes, M McMahon, L Comai… - Genome biology, 2010 - Springer
Background Allotetraploids carry pairs of diverged homoeologs for most genes. With the
genome doubled in size, the number of putative interactions is enormous. This poses …

Epigenetic phenomena and the evolution of plant allopolyploids

B Liu, JF Wendel - Molecular phylogenetics and evolution, 2003 - Elsevier
Allopolyploid speciation is widespread in plants, yet the molecular requirements for
successful orchestration of coordinated gene expression for two divergent and reunited …

Gradual evolution of allopolyploidy in Arabidopsis suecica

R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …

[HTML][HTML] Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana

Z Yu, G Haberer, M Matthes, T Rattei… - Proceedings of the …, 2010 - National Acad Sciences
Polyploidy, the presence of more than two complete sets of chromosomes in an organism,
has significantly shaped the genomes of angiosperms during evolution. Two forms of …

Genome-wide dosage-dependent and-independent regulation contributes to gene expression and evolutionary novelty in plant polyploids

X Shi, C Zhang, DK Ko, ZJ Chen - Molecular Biology and …, 2015 - academic.oup.com
Polyploidy provides evolutionary and morphological novelties in many plants and some
animals. However, the role of genome dosage and composition in gene expression changes …

RNAi of met1 Reduces DNA Methylation and Induces Genome-Specific Changes in Gene Expression and Centromeric Small RNA Accumulation in Arabidopsis …

M Chen, M Ha, E Lackey, J Wang, ZJ Chen - Genetics, 2008 - academic.oup.com
Abstract Changes in genome structure and gene expression have been documented in both
resynthesized and natural allopolyploids that contain two or more divergent genomes. The …

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

ZJ Chen, Z Ni - Bioessays, 2006 - Wiley Online Library
Polyploidy is produced by multiplication of a single genome (autopolyploid) or combination
of two or more divergent genomes (allopolyploid). The available data obtained from the …