Copy number variants outperform SNPs to reveal genotype–temperature association in a marine species

Y Dorant, H Cayuela, K Wellband, M Laporte… - Molecular …, 2020 - Wiley Online Library
Copy number variants (CNVs) are a major component of genotypic and phenotypic variation
in genomes. To date, our knowledge of genotypic variation and evolution has largely been …

Seascape genomics provides evidence for thermal adaptation and current‐mediated population structure in American lobster (Homarus americanus)

L Benestan, BK Quinn, H Maaroufi, M Laporte… - Molecular …, 2016 - Wiley Online Library
Investigating how environmental features shape the genetic structure of populations is
crucial for understanding how they are potentially adapted to their habitats, as well as for …

Environmental selection on transcriptome‐derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

MT Limborg, SJ Helyar, M De Bruyn… - Molecular …, 2012 - Wiley Online Library
High gene flow is considered the norm for most marine organisms and is expected to limit
their ability to adapt to local environments. Few studies have directly compared the patterns …

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae)

S Renaut, AW Nolte, L Bernatchez - Molecular ecology, 2010 - Wiley Online Library
Next‐generation sequencing allows the discovery of large numbers of single nucleotide
polymorphisms (SNPs) in species where little genomic information was previously available …

RAD genotyping reveals fine‐scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the a Merican Lobster (H …

L Benestan, T Gosselin, C Perrier… - Molecular …, 2015 - Wiley Online Library
Deciphering genetic structure and inferring connectivity in marine species have been
challenging due to weak genetic differentiation and limited resolution offered by traditional …

Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow

AM Westram, M Rafajlović, P Chaube, R Faria… - Evolution …, 2018 - academic.oup.com
Adaptive divergence and speciation may happen despite opposition by gene flow.
Identifying the genomic basis underlying divergence with gene flow is a major task in …

Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

PA Gagnaire, OE Gaggiotti - Current Zoology, 2016 - academic.oup.com
Highly fecund marine species with dispersive life-history stages often display large
population sizes and wide geographic distribution ranges. Consequently, they are expected …

Landscape genomics of the American lobster (Homarus americanus)

Y Dorant, M Laporte, Q Rougemont… - Molecular …, 2022 - Wiley Online Library
In marine species experiencing intense fishing pressures, knowledge of genetic structure
and local adaptation represent a critical information to assist sustainable management. In …

Genomic signatures of environmental selection despite near‐panmixia in summer flounder

JA Hoey, ML Pinsky - Evolutionary Applications, 2018 - Wiley Online Library
Rapid environmental change is altering the selective pressures experienced by marine
species. While adaptation to local environmental conditions depends on a balance between …

Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish

H Cayuela, Q Rougemont, M Laporte… - Molecular …, 2020 - Wiley Online Library
Gene flow has tremendous importance for local adaptation, by influencing the fate of de
novo mutations, maintaining standing genetic variation and driving adaptive introgression …