Metagenomics: the next culture-independent game changer
JD Forbes, NC Knox, J Ronholm, F Pagotto… - Frontiers in …, 2017 - frontiersin.org
A trend towards the abandonment of obtaining pure culture isolates in frontline laboratories
is at a crossroads with the ability of public health agencies to perform their basic mandate of …
is at a crossroads with the ability of public health agencies to perform their basic mandate of …
Metagenomics for pathogen detection in public health
RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang - Genome medicine, 2013 - Springer
Traditional pathogen detection methods in public health infectious disease surveillance rely
upon the identification of agents that are already known to be associated with a particular …
upon the identification of agents that are already known to be associated with a particular …
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
N Couto, L Schuele, EC Raangs, MP Machado… - Scientific reports, 2018 - nature.com
High throughput sequencing has been proposed as a one-stop solution for diagnostics and
molecular typing directly from patient samples, allowing timely and appropriate …
molecular typing directly from patient samples, allowing timely and appropriate …
Next generation and other sequencing technologies in diagnostic microbiology and infectious diseases
EE Hilt, P Ferrieri - Genes, 2022 - mdpi.com
Next-generation sequencing (NGS) technologies have become increasingly available for
use in the clinical microbiology diagnostic environment. There are three main applications of …
use in the clinical microbiology diagnostic environment. There are three main applications of …
[HTML][HTML] Analytical tools and databases for metagenomics in the next-generation sequencing era
M Kim, KH Lee, SW Yoon, BS Kim, J Chun… - Genomics & …, 2013 - ncbi.nlm.nih.gov
Metagenomics has become one of the indispensable tools in microbial ecology for the last
few decades, and a new revolution in metagenomic studies is now about to begin, with the …
few decades, and a new revolution in metagenomic studies is now about to begin, with the …
Metagenomics: microbial diversity through a scratched lens
B Temperton, SJ Giovannoni - Current opinion in microbiology, 2012 - Elsevier
Since nucleic acids were first extracted directly from the environment and sequenced,
metagenomics has grown to one of the most data-rich and pervasive techniques for …
metagenomics has grown to one of the most data-rich and pervasive techniques for …
[HTML][HTML] Metagenomics approaches for improving food safety: a review
C Billington, JM Kingsbury, L Rivas - Journal of food Protection, 2022 - Elsevier
Advancements in next-generation sequencing technology have dramatically reduced the
cost and increased the ease of microbial whole genome sequencing. This approach is …
cost and increased the ease of microbial whole genome sequencing. This approach is …
High‐throughput metagenomics for identification of pathogens in the clinical settings
N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …
owing to rapid technological developments and substantially reduced costs. However …
Shotgun metagenomics, from sampling to analysis
C Quince, AW Walker, JT Simpson, NJ Loman… - Nature …, 2017 - nature.com
Diverse microbial communities of bacteria, archaea, viruses and single-celled eukaryotes
have crucial roles in the environment and in human health. However, microbes are …
have crucial roles in the environment and in human health. However, microbes are …
The road to metagenomics: from microbiology to DNA sequencing technologies and bioinformatics
A Escobar-Zepeda, A Vera-Ponce de León… - Frontiers in …, 2015 - frontiersin.org
The study of microorganisms that pervade each and every part of this planet has
encountered many challenges through time such as the discovery of unknown organisms …
encountered many challenges through time such as the discovery of unknown organisms …