Concentration fluctuations due to size-dependent gene expression and cell-size control mechanisms
Intracellular reaction rates depend on concentrations and hence their levels are often
regulated. However classical models of stochastic gene expression lack a cell size …
regulated. However classical models of stochastic gene expression lack a cell size …
Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis
Intracellular reaction rates depend on concentrations and hence their levels are often
regulated. However classical models of stochastic gene expression lack a cell size …
regulated. However classical models of stochastic gene expression lack a cell size …
Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits
F Bertaux, S Marguerat… - Royal Society open …, 2018 - royalsocietypublishing.org
The cell division rate, size and gene expression programmes change in response to
external conditions. These global changes impact on average concentrations of biomolecule …
external conditions. These global changes impact on average concentrations of biomolecule …
[PDF][PDF] Accuracy and limitations of extrinsic noise models to describe gene expression in growing cells
The standard model describing the fluctuations of mRNA numbers in single cells is the
telegraph model which includes synthesis and degradation of mRNA, and switching of the …
telegraph model which includes synthesis and degradation of mRNA, and switching of the …
[HTML][HTML] Connecting growth with gene expression: of noise and numbers
V Shahrezaei, S Marguerat - Current opinion in microbiology, 2015 - Elsevier
Highlights•Cellular growth, gene expression, and cell size are coordinated globally.•Cellular
growth is connected to protein numbers, noise, and gene networks dynamics.•Global …
growth is connected to protein numbers, noise, and gene networks dynamics.•Global …
Pyecolib: a python library for simulating stochastic cell size dynamics
Recently, there has been an increasing need for tools to simulate cell size regulation due to
important applications in cell proliferation and gene expression. However, implementing the …
important applications in cell proliferation and gene expression. However, implementing the …
[HTML][HTML] Gene expression in growing cells: A biophysical primer
I Golding, A Amir - ArXiv, 2023 - ncbi.nlm.nih.gov
Cell growth and gene expression, two essential elements of all living systems, have long
been the focus of biophysical interrogation. Advances in experimental single-cell methods …
been the focus of biophysical interrogation. Advances in experimental single-cell methods …
Transcription stochasticity of complex gene regulation models
A Schwabe, KN Rybakova, FJ Bruggeman - Biophysical Journal, 2012 - cell.com
Transcription is regulated by a multitude of factors that concertedly induce genes to switch
between activity states. Eukaryotic transcription involves a multitude of complexes that …
between activity states. Eukaryotic transcription involves a multitude of complexes that …
The chemical fluctuation theorem governing gene expression
Gene expression is a complex stochastic process composed of numerous enzymatic
reactions with rates coupled to hidden cell-state variables. Despite advances in single-cell …
reactions with rates coupled to hidden cell-state variables. Despite advances in single-cell …
Frequency domain analysis of fluctuations of mRNA and protein copy numbers within a cell lineage: theory and experimental validation
The stochasticity of gene expression is manifested in the fluctuations of messenger
ribonucleic acid and protein copy numbers within a cell lineage over time. While data of this …
ribonucleic acid and protein copy numbers within a cell lineage over time. While data of this …
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