An overview of modern applications of negative binomial modelling in ecology and biodiversity

J Stoklosa, RV Blakey, FKC Hui - Diversity, 2022 - mdpi.com
Negative binomial modelling is one of the most commonly used statistical tools for analysing
count data in ecology and biodiversity research. This is not surprising given the prevalence …

Using the negative binomial distribution to model overdispersion in ecological count data

A Lindén, S Mäntyniemi - Ecology, 2011 - Wiley Online Library
A Poisson process is a commonly used starting point for modeling stochastic variation of
ecological count data around a theoretical expectation. However, data typically show more …

Sensitivity of binomial N‐mixture models to overdispersion: The importance of assessing model fit

J Knape, D Arlt, F Barraquand, Å Berg… - Methods in Ecology …, 2018 - Wiley Online Library
Binomial N‐mixture models are commonly applied to analyse population survey data. By
estimating detection probabilities, N‐mixture models aim at extracting information about …

Quasi‐Poisson vs. negative binomial regression: how should we model overdispersed count data?

JM Ver Hoef, PL Boveng - Ecology, 2007 - Wiley Online Library
Quasi‐Poisson and negative binomial regression models have equal numbers of
parameters, and either could be used for overdispersed count data. While they often give …

A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology & evolution

XA Harrison - PeerJ, 2015 - peerj.com
Overdispersion is a common feature of models of biological data, but researchers often fail
to model the excess variation driving the overdispersion, resulting in biased parameter …

Analysis of frequency count data using the negative binomial distribution

GC White, RE Bennetts - Ecology, 1996 - Wiley Online Library
The statistical distributions of the counts of organisms are generally skewed, and hence not
normally distributed, nor are variances constant across treatments. We present a likelihood …

Identifiability in N‐mixture models: a large‐scale screening test with bird data

M Kéry - Ecology, 2018 - Wiley Online Library
Binomial N‐mixture models have proven very useful in ecology, conservation, and
monitoring: they allow estimation and modeling of abundance separately from detection …

Modeling abundance using N‐mixture models: the importance of considering ecological mechanisms

LN Joseph, C Elkin, TG Martin… - Ecological …, 2009 - Wiley Online Library
Predicting abundance across a species' distribution is useful for studies of ecology and
biodiversity management. Modeling of survey data in relation to environmental variables can …

Analysing continuous proportions in ecology and evolution: A practical introduction to beta and Dirichlet regression

JC Douma, JT Weedon - Methods in Ecology and Evolution, 2019 - Wiley Online Library
Proportional data, in which response variables are expressed as percentages or fractions of
a whole, are analysed in many subfields of ecology and evolution. The scale‐independence …

Estimating the number of species with CatchAll

J Bunge - Biocomputing 2011, 2011 - World Scientific
In many situations we are faced with the need to estimate the number of classes in a
population from observed count data: this arises not only in biology, where we are interested …