DNNGP, a deep neural network-based method for genomic prediction using multi-omics data in plants
Genomic prediction is an effective way to accelerate the rate of agronomic trait improvement
in plants. Traditional methods typically use linear regression models with clear assumptions; …
in plants. Traditional methods typically use linear regression models with clear assumptions; …
Multi-environment genomic prediction of plant traits using deep learners with dense architecture
A Montesinos-López… - G3: Genes …, 2018 - academic.oup.com
Genomic selection is revolutionizing plant breeding and therefore methods that improve
prediction accuracy are useful. For this reason, active research is being conducted to build …
prediction accuracy are useful. For this reason, active research is being conducted to build …
A deep convolutional neural network approach for predicting phenotypes from genotypes
Main conclusion Deep learning is a promising technology to accurately select individuals
with high phenotypic values based on genotypic data. Abstract Genomic selection (GS) is a …
with high phenotypic values based on genotypic data. Abstract Genomic selection (GS) is a …
A review of deep learning applications for genomic selection
OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …
methods have been proposed including the standard additive genetic effect model for which …
A guide on deep learning for complex trait genomic prediction
M Pérez-Enciso, LM Zingaretti - Genes, 2019 - mdpi.com
Deep learning (DL) has emerged as a powerful tool to make accurate predictions from
complex data such as image, text, or video. However, its ability to predict phenotypic values …
complex data such as image, text, or video. However, its ability to predict phenotypic values …
Multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits
OA Montesinos-López… - G3: Genes, genomes …, 2018 - academic.oup.com
Multi-trait and multi-environment data are common in animal and plant breeding programs.
However, what is lacking are more powerful statistical models that can exploit the correlation …
However, what is lacking are more powerful statistical models that can exploit the correlation …
Deep learning for predicting complex traits in spring wheat breeding program
Genomic selection (GS) is transforming the field of plant breeding and implementing models
that improve prediction accuracy for complex traits is needed. Analytical methods for …
that improve prediction accuracy for complex traits is needed. Analytical methods for …
Deep kernel and deep learning for genome-based prediction of single traits in multienvironment breeding trials
Deep learning (DL) is a promising method for genomic-enabled prediction. However, the
implementation of DL is difficult because many hyperparameters (number of hidden layers …
implementation of DL is difficult because many hyperparameters (number of hidden layers …
A benchmarking between deep learning, support vector machine and Bayesian threshold best linear unbiased prediction for predicting ordinal traits in plant breeding
OA Montesinos-López, J Martín-Vallejo… - G3: Genes …, 2019 - academic.oup.com
Genomic selection is revolutionizing plant breeding. However, still lacking are better
statistical models for ordinal phenotypes to improve the accuracy of the selection of …
statistical models for ordinal phenotypes to improve the accuracy of the selection of …
Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …
are predicted using genome wide marker information. Although numerous examples of GP …