Experimental methods modestly impact interpretation of the effect of environmental exposures on the larval zebrafish gut microbiome

K Stagaman, KD Kasschau, RL Tanguay… - Scientific Reports, 2022 - nature.com
Rapidly growing fields, such as microbiome science, often lack standardization of
procedures across research groups. This is especially the case for microbiome …

[HTML][HTML] Common laboratory diets differentially influence zebrafish gut microbiome's successional development and sensitivity to pathogen exposure

M Sieler, C Al-Samarrie, K Kasschau, Z Varga… - Research …, 2023 - ncbi.nlm.nih.gov
Background: Despite the long-established importance of zebrafish (Danio rerio) as a model
organism and their increasing use in microbiome-targeted studies, relatively little is known …

Phylogenetic integration reveals the zebrafish core microbiome and its sensitivity to environmental exposures

TJ Sharpton, K Stagaman, MJ Sieler Jr, HK Arnold… - Toxics, 2021 - mdpi.com
Zebrafish are increasingly used to study how environmental exposures impact vertebrate gut
microbes. However, we understand little about which microbial taxa are common to the …

Zebrafish microbiome studies make waves

K Stagaman, TJ Sharpton, K Guillemin - Lab animal, 2020 - nature.com
Zebrafish have a 50-year history as a model organism for studying vertebrate developmental
biology and more recently have emerged as a powerful model system for studying …

The zebrafish gut microbiome influences benzo [a] pyrene developmental neurotoxicity

K Stagaman, A Alexiev, M Sieler, A Hammer… - 2024 - researchsquare.com
Early-life exposure to environmental toxicants like Benzo [a] pyrene (BaP) is associated with
several health consequences in vertebrates (ie, impaired or altered neurophysiological and …

The zebrafish gut microbiome influences benzo [a] pyrene developmental neurobehavioral toxicity

K Stagaman, A Alexiev, MJ Sieler, A Hammer… - Scientific Reports, 2024 - nature.com
Early-life exposure to environmental toxicants like Benzo [a] pyrene (BaP) is associated with
several health consequences in vertebrates (ie, impaired or altered neurophysiological and …

Using zebrafish to investigate interactions between xenobiotics and microbiota

TR Catron, S Gaballah, T Tal - Current Pharmacology Reports, 2019 - Springer
Abstract Purpose of Review Humans underwent coevolution with microbes that engage in a
range of mutually beneficial functions. The intestinal microbiome consists of trillions of …

An integrated gene catalog of the zebrafish gut microbiome reveals significant homology with mammalian microbiomes

CA Gaulke, LM Beaver, CR Armour, IR Humphreys… - BioRxiv, 2020 - biorxiv.org
Gut microbiome research increasingly utilizes zebrafish (Danio rerio) given their amenability
to high-throughput experimental designs. However, the utility of zebrafish for discerning …

Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae infection

MJ Sieler Jr, CE Al-Samarrie, KD Kasschau… - Animal Microbiome, 2023 - Springer
Background Despite the long-established importance of zebrafish (Danio rerio) as a model
organism and their increasing use in microbiome-targeted studies, relatively little is known …

Internal versus external pressures: effect of housing systems on the zebrafish microbiome

P Breen, AD Winters, D Nag, MM Ahmad, KR Theis… - Zebrafish, 2019 - liebertpub.com
Zebrafish (Danio rerio) are an attractive model organism for scientific studies, including host–
microbe interactions. The organism is particularly useful for studying aquatic microbes that …