Falcon: a highly flexible open-source software for closed-loop neuroscience

D Ciliberti, F Kloosterman - Journal of neural engineering, 2017 - iopscience.iop.org
Objective. Closed-loop experiments provide unique insights into brain dynamics and
function. To facilitate a wide range of closed-loop experiments, we created an open-source …

PackIO and EphysViewer: software tools for acquisition and analysis of neuroscience data

BO Watson, R Yuste, AM Packer - bioRxiv, 2016 - biorxiv.org
We present an open-source synchronization software package, PackIO, that can record and
generate voltage signals to enable complex experimental paradigms across multiple …

[HTML][HTML] Open source tools for large-scale neuroscience

J Freeman - Current opinion in neurobiology, 2015 - Elsevier
Highlights•New recording technologies generating massive, complex data sets.•Analysis
workflows are complex, diverse, and fundamentally exploratory.•Rich open-source …

High-throughput neuroanatomy and trigger-action programming: a case study in research automation

R Chard, R Vescovi, M Du, H Li, K Chard… - Proceedings of the 1st …, 2018 - dl.acm.org
Exponential increases in data volumes and velocities are overwhelming finite human
capabilities. Continued progress in science and engineering demands that we automate a …

Bonsai: an event-based framework for processing and controlling data streams

G Lopes, N Bonacchi, J Frazão, JP Neto… - Frontiers in …, 2015 - frontiersin.org
The design of modern scientific experiments requires the control and monitoring of many
different data streams. However, the serial execution of programming instructions in a …

Real-time experimental control using network-based parallel processing

B Kim, SC Kenchappa, A Sunkara, TY Chang… - Elife, 2019 - elifesciences.org
Modern neuroscience research often requires the coordination of multiple processes such
as stimulus generation, real-time experimental control, as well as behavioral and neural …

Mapping brain activity at scale with cluster computing

J Freeman, N Vladimirov, T Kawashima, Y Mu… - Nature …, 2014 - nature.com
Understanding brain function requires monitoring and interpreting the activity of large
networks of neurons during behavior. Advances in recording technology are greatly …

RTHybrid: a standardized and open-source real-time software model library for experimental neuroscience

R Amaducci, M Reyes-Sanchez, I Elices… - Frontiers in …, 2019 - frontiersin.org
Closed-loop technologies provide novel ways of online observation, control and
bidirectional interaction with the nervous system, which help to study complex non-linear …

Next-generation brain observatories

C Koch, K Svoboda, A Bernard, MA Basso… - Neuron, 2022 - cell.com
We propose centralized brain observatories for large-scale recordings of neural activity in
mice and non-human primates coupled with cloud-based data analysis and sharing. Such …

[PDF][PDF] Python meets systems neuroscience: affordable, scalable and open-source electrophysiology in awake, behaving rodents.

N Mukherjee, J Wachutka, DB Katz - SciPy, 2017 - pdfs.semanticscholar.org
In-vivo electrophysiology, the recording of neurons in the brains of awake, behaving
animals, is currently undergoing paradigm shifts. There is a push towards moving to open …