Falcon: a highly flexible open-source software for closed-loop neuroscience
D Ciliberti, F Kloosterman - Journal of neural engineering, 2017 - iopscience.iop.org
Objective. Closed-loop experiments provide unique insights into brain dynamics and
function. To facilitate a wide range of closed-loop experiments, we created an open-source …
function. To facilitate a wide range of closed-loop experiments, we created an open-source …
PackIO and EphysViewer: software tools for acquisition and analysis of neuroscience data
We present an open-source synchronization software package, PackIO, that can record and
generate voltage signals to enable complex experimental paradigms across multiple …
generate voltage signals to enable complex experimental paradigms across multiple …
[HTML][HTML] Open source tools for large-scale neuroscience
J Freeman - Current opinion in neurobiology, 2015 - Elsevier
Highlights•New recording technologies generating massive, complex data sets.•Analysis
workflows are complex, diverse, and fundamentally exploratory.•Rich open-source …
workflows are complex, diverse, and fundamentally exploratory.•Rich open-source …
High-throughput neuroanatomy and trigger-action programming: a case study in research automation
Exponential increases in data volumes and velocities are overwhelming finite human
capabilities. Continued progress in science and engineering demands that we automate a …
capabilities. Continued progress in science and engineering demands that we automate a …
Bonsai: an event-based framework for processing and controlling data streams
The design of modern scientific experiments requires the control and monitoring of many
different data streams. However, the serial execution of programming instructions in a …
different data streams. However, the serial execution of programming instructions in a …
Real-time experimental control using network-based parallel processing
Modern neuroscience research often requires the coordination of multiple processes such
as stimulus generation, real-time experimental control, as well as behavioral and neural …
as stimulus generation, real-time experimental control, as well as behavioral and neural …
Mapping brain activity at scale with cluster computing
Understanding brain function requires monitoring and interpreting the activity of large
networks of neurons during behavior. Advances in recording technology are greatly …
networks of neurons during behavior. Advances in recording technology are greatly …
RTHybrid: a standardized and open-source real-time software model library for experimental neuroscience
Closed-loop technologies provide novel ways of online observation, control and
bidirectional interaction with the nervous system, which help to study complex non-linear …
bidirectional interaction with the nervous system, which help to study complex non-linear …
Next-generation brain observatories
We propose centralized brain observatories for large-scale recordings of neural activity in
mice and non-human primates coupled with cloud-based data analysis and sharing. Such …
mice and non-human primates coupled with cloud-based data analysis and sharing. Such …
[PDF][PDF] Python meets systems neuroscience: affordable, scalable and open-source electrophysiology in awake, behaving rodents.
N Mukherjee, J Wachutka, DB Katz - SciPy, 2017 - pdfs.semanticscholar.org
In-vivo electrophysiology, the recording of neurons in the brains of awake, behaving
animals, is currently undergoing paradigm shifts. There is a push towards moving to open …
animals, is currently undergoing paradigm shifts. There is a push towards moving to open …