Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

PP Edger, R Smith, MR McKain, AM Cooley… - The Plant …, 2017 - academic.oup.com
Recent studies have shown that one of the parental subgenomes in ancient polyploids is
generally more dominant, having retained more genes and being more highly expressed, a …

Patterns and consequences of subgenome differentiation provide insights into the nature of paleopolyploidy in plants

M Zhao, B Zhang, D Lisch, J Ma - The Plant Cell, 2017 - academic.oup.com
Polyploidy is an important feature of plant genomes, but the nature of many polyploidization
events remains to be elucidated. Here, we demonstrate that the evolutionary fates of the …

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

MR Woodhouse, F Cheng, JC Pires… - Proceedings of the …, 2014 - National Acad Sciences
Whole-genome duplications happen repeatedly in a typical flowering plant lineage.
Following most ancient tetraploidies, the two subgenomes are distinguishable because one …

Subgenome assignment in allopolyploids: challenges and future directions

PP Edger, MR McKain, KA Bird, R VanBuren - Current opinion in plant …, 2018 - Elsevier
Highlights•Many recent and ancient allopolyploids exhibit subgenome
dominance.•Extensive homoeologous exchanges complicate accurate subgenome …

Polyploidy: pitfalls and paths to a paradigm

DE Soltis, CJ Visger, DB Marchant… - American journal of …, 2016 - Wiley Online Library
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …

Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

W Zhu, B Hu, C Becker, ES Doğan, KW Berendzen… - Genome biology, 2017 - Springer
Background The merging of two diverged genomes can result in hybrid offspring that
phenotypically differ greatly from both parents. In plants, interspecific hybridization plays …

Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus

KA Bird, CE Niederhuth, S Ou, M Gehan… - New …, 2021 - Wiley Online Library
Allopolyploidisation merges evolutionarily distinct parental genomes (subgenomes) into a
single nucleus. A frequent observation is that one subgenome is 'dominant'over the other …

Parental DNA methylation states are associated with heterosis in epigenetic hybrids

K Lauss, R Wardenaar, R Oka, MHA van Hulten… - Plant …, 2018 - academic.oup.com
Despite the importance and wide exploitation of heterosis in commercial crop breeding, the
molecular mechanisms behind this phenomenon are not completely understood. Recent …

Gene retention, fractionation and subgenome differences in polyploid plants

F Cheng, J Wu, X Cai, J Liang, M Freeling, X Wang - Nature plants, 2018 - nature.com
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …

One subgenome to rule them all: underlying mechanisms of subgenome dominance

EI Alger, PP Edger - Current opinion in plant biology, 2020 - Elsevier
Highlights• A single subgenome in allopolyploids may contribute to the majority of the
phenotype.• Methylation of transposons near genes is associated with subgenome …