[HTML][HTML] Alu repeats increase local recombination rates
DJ Witherspoon, WS Watkins, Y Zhang, J Xing… - BMC genomics, 2009 - Springer
Background Recombination rates vary widely across the human genome, but little of that
variation is correlated with known DNA sequence features. The genome contains more than …
variation is correlated with known DNA sequence features. The genome contains more than …
Sequence correlation between neighboring Alu instances suggests post-retrotransposition sequence exchange due to Alu gene conversion
D Zhi - Gene, 2007 - Elsevier
Alu elements constitute 10% of the human genome. Alu mobilization is important in the
evolution of the human genome. While retrotransposition is the primary pathway of Alu …
evolution of the human genome. While retrotransposition is the primary pathway of Alu …
Alu repeat discovery and characterization within human genomes
Human genomes are now being rapidly sequenced, but not all forms of genetic variation are
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …
Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project
MK Konkel, JA Walker, AB Hotard… - Genome biology and …, 2015 - academic.oup.com
The goal of the 1000 Genomes Consortium is to characterize human genome structural
variation (SV), including forms of copy number variations such as deletions, duplications …
variation (SV), including forms of copy number variations such as deletions, duplications …
Alu-associated enhancement of single nucleotide polymorphisms in the human genome
SK Ng, H Xue - Gene, 2006 - Elsevier
Identifying features shaping the architecture of sequence variations is important for
understanding genome evolution and mapping disease loci. In this study, high-resolution …
understanding genome evolution and mapping disease loci. In this study, high-resolution …
[HTML][HTML] Human genomic deletions mediated by recombination between Alu elements
Recombination between Alu elements results in genomic deletions associated with many
human genetic disorders. Here, we compare the reference human and chimpanzee …
human genetic disorders. Here, we compare the reference human and chimpanzee …
Alu insertion variants alter gene transcript levels
LM Payer, JP Steranka, MS Kryatova, G Grillo… - Genome …, 2021 - genome.cshlp.org
Alu are high copy number interspersed repeats that have accumulated near genes during
primate and human evolution. They are a pervasive source of structural variation in modern …
primate and human evolution. They are a pervasive source of structural variation in modern …
[HTML][HTML] The contribution of alu elements to mutagenic DNA double-strand break repair
ME Morales, TB White, VA Streva, CB DeFreece… - PLoS …, 2015 - journals.plos.org
Alu elements make up the largest family of human mobile elements, numbering 1.1 million
copies and comprising 11% of the human genome. As a consequence of evolution and …
copies and comprising 11% of the human genome. As a consequence of evolution and …
[HTML][HTML] Genetic and epigenetic variations contributed by Alu retrotransposition
A de Andrade, M Wang, MF Bonaldo, H Xie, MB Soares - BMC genomics, 2011 - Springer
Background De novo retrotransposition of Alu elements has been recognized as a major
driver for insertion polymorphisms in human populations. In this study, we exploited Alu …
driver for insertion polymorphisms in human populations. In this study, we exploited Alu …
[HTML][HTML] An Alu transposition model for the origin and expansion of human segmental duplications
Relative to genomes of other sequenced organisms, the human genome appears
particularly enriched for large, highly homologous segmental duplications (⩾ 90% sequence …
particularly enriched for large, highly homologous segmental duplications (⩾ 90% sequence …