[HTML][HTML] Alu repeats increase local recombination rates

DJ Witherspoon, WS Watkins, Y Zhang, J Xing… - BMC genomics, 2009 - Springer
Background Recombination rates vary widely across the human genome, but little of that
variation is correlated with known DNA sequence features. The genome contains more than …

Sequence correlation between neighboring Alu instances suggests post-retrotransposition sequence exchange due to Alu gene conversion

D Zhi - Gene, 2007 - Elsevier
Alu elements constitute 10% of the human genome. Alu mobilization is important in the
evolution of the human genome. While retrotransposition is the primary pathway of Alu …

Alu repeat discovery and characterization within human genomes

F Hormozdiari, C Alkan, M Ventura… - Genome …, 2011 - genome.cshlp.org
Human genomes are now being rapidly sequenced, but not all forms of genetic variation are
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …

Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project

MK Konkel, JA Walker, AB Hotard… - Genome biology and …, 2015 - academic.oup.com
The goal of the 1000 Genomes Consortium is to characterize human genome structural
variation (SV), including forms of copy number variations such as deletions, duplications …

Alu-associated enhancement of single nucleotide polymorphisms in the human genome

SK Ng, H Xue - Gene, 2006 - Elsevier
Identifying features shaping the architecture of sequence variations is important for
understanding genome evolution and mapping disease loci. In this study, high-resolution …

[HTML][HTML] Human genomic deletions mediated by recombination between Alu elements

SK Sen, K Han, J Wang, J Lee, H Wang… - The American Journal of …, 2006 - cell.com
Recombination between Alu elements results in genomic deletions associated with many
human genetic disorders. Here, we compare the reference human and chimpanzee …

Alu insertion variants alter gene transcript levels

LM Payer, JP Steranka, MS Kryatova, G Grillo… - Genome …, 2021 - genome.cshlp.org
Alu are high copy number interspersed repeats that have accumulated near genes during
primate and human evolution. They are a pervasive source of structural variation in modern …

[HTML][HTML] The contribution of alu elements to mutagenic DNA double-strand break repair

ME Morales, TB White, VA Streva, CB DeFreece… - PLoS …, 2015 - journals.plos.org
Alu elements make up the largest family of human mobile elements, numbering 1.1 million
copies and comprising 11% of the human genome. As a consequence of evolution and …

[HTML][HTML] Genetic and epigenetic variations contributed by Alu retrotransposition

A de Andrade, M Wang, MF Bonaldo, H Xie, MB Soares - BMC genomics, 2011 - Springer
Background De novo retrotransposition of Alu elements has been recognized as a major
driver for insertion polymorphisms in human populations. In this study, we exploited Alu …

[HTML][HTML] An Alu transposition model for the origin and expansion of human segmental duplications

JA Bailey, G Liu, EE Eichler - The American Journal of Human Genetics, 2003 - cell.com
Relative to genomes of other sequenced organisms, the human genome appears
particularly enriched for large, highly homologous segmental duplications (⩾ 90% sequence …