Codon usage patterns across seven Rosales species

Y Zhang, Z Shen, X Meng, L Zhang, Z Liu, M Liu… - BMC plant biology, 2022 - Springer
Background Codon usage bias (CUB) analysis is an effective method for studying specificity,
evolutionary relationships, and mRNA translation and discovering new genes among …

Patterns of genome-wide codon usage bias in tobacco, tomato and potato

AM Anwar, M Aljabri, M El-Soda - … & Biotechnological Equipment, 2021 - Taylor & Francis
Understanding codon usage patterns and their shaping factors in members of the
Solanaceae family may reflect important features of their evolutionary history. Here, we …

Deciphering Codon Usage Patterns in Genome of Cucumis sativus in Comparison with Nine Species of Cucurbitaceae

Y Niu, Y Luo, C Wang, W Liao - Agronomy, 2021 - mdpi.com
Cucumber is the most important vegetable crop in the Cucurbitaceae family. Condon usage
bias (CUB) is a valuable character of species evolution. However, there is little research on …

Analysis of Synonymous Codon Usage Patterns in Seven Different Citrus Species

C Xu, J Dong, C Tong, X Gong… - Evolutionary …, 2013 - journals.sagepub.com
We used large samples of expressed sequence tags to characterize the patterns of codon
usage bias (CUB) in seven different Citrus species and to analyze their evolutionary effect …

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

X Nie, P Deng, K Feng, P Liu, X Du, FM You… - Plant molecular biology …, 2014 - Springer
Codon usage bias (CUB) is an important evolutionary feature in a genome and has been
widely documented from prokaryotes to eukaryotes. However, the significance of CUB in the …

Analysis of codon usage patterns in citrus based on coding sequence data

Z Shen, Z Gan, F Zhang, X Yi, J Zhang, X Wan - BMC genomics, 2020 - Springer
Background Codon usage is an important determinant of gene expression levels that can
help us understand codon biology, evolution and mRNA translation of species. The majority …

Deciphering codon usage patterns and evolutionary forces in chloroplast genes of Camellia sinensis var. assamica and Camellia sinensis var. sinensis in comparison …

S Yengkhom, A Uddin, S Chakraborty - Journal of Integrative Agriculture, 2019 - Elsevier
Codon usage bias (CUB) is a unique property of genome which refers to non-random usage
of synonymous codons in coding sequences. The present study makes an attempt to find out …

Genome-wide comparative analysis of the codon usage patterns in plants

N Li, Y Li, C Zheng, J Huang, S Zhang - Genes & Genomics, 2016 - Springer
Codon usage analysis has been a classical area of study for decades and is important for
evolution, mRNA translation, and new gene discovery. Recently, genome sequencing has …

Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data

C Feng, C Xu, Y Wang, W Liu, X Yin, X Li, M Chen… - BMC genomics, 2013 - Springer
Background Codon usage analysis has been a classical topic for decades and has
significances for studies of evolution, mRNA translation, and new gene discovery, etc. While …

Genome-wide analysis of codon usage bias in four sequenced cotton species

L Wang, H Xing, Y Yuan, X Wang, M Saeed, J Tao… - PloS one, 2018 - journals.plos.org
Codon usage bias (CUB) is an important evolutionary feature in a genome which provides
important information for studying organism evolution, gene function and exogenous gene …