R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
PA Ginno, PL Lott, HC Christensen, I Korf, F Chédin - Molecular cell, 2012 - cell.com
CpG islands (CGIs) function as promoters for approximately 60% of human genes. Most of
these elements remain protected from CpG methylation, a prevalent epigenetic modification …
these elements remain protected from CpG methylation, a prevalent epigenetic modification …
Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved
DNA methylation is a repressive epigenetic modification that covers vertebrate genomes.
Regions known as CpG islands (CGIs), which are refractory to DNA methylation, are often …
Regions known as CpG islands (CGIs), which are refractory to DNA methylation, are often …
[HTML][HTML] CpG islands–'a rough guide'
RS Illingworth, AP Bird - FEBS letters, 2009 - Elsevier
Mammalian genomes are punctuated by DNA sequences containing an atypically high
frequency of CpG sites termed CpG islands (CGIs). CGIs generally lack DNA methylation …
frequency of CpG sites termed CpG islands (CGIs). CGIs generally lack DNA methylation …
DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease
DM Jeziorska, RJS Murray… - Proceedings of the …, 2017 - National Acad Sciences
The human genome contains∼ 30,000 CpG islands (CGIs). While CGIs associated with
promoters nearly always remain unmethylated, many of the∼ 9,000 CGIs lying within gene …
promoters nearly always remain unmethylated, many of the∼ 9,000 CGIs lying within gene …
GC skew at the 5′ and 3′ ends of human genes links R-loop formation to epigenetic regulation and transcription termination
Strand asymmetry in the distribution of guanines and cytosines, measured by GC skew,
predisposes DNA sequences toward R-loop formation upon transcription. Previous work …
predisposes DNA sequences toward R-loop formation upon transcription. Previous work …
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
JP Thomson, PJ Skene, J Selfridge, T Clouaire, J Guy… - Nature, 2010 - nature.com
CpG islands (CGIs) are prominent in the mammalian genome owing to their GC-rich base
composition and high density of CpG dinucleotides,. Most human gene promoters are …
composition and high density of CpG dinucleotides,. Most human gene promoters are …
DNA G‐quadruplex stability, position and chromatin accessibility are associated with CpG island methylation
M Jara‐Espejo, SR Line - The FEBS journal, 2020 - Wiley Online Library
CpG islands (CGI) are genomic regions associated with gene promoters and involved in
gene expression regulation. Despite their high CpG content and unlike bulk genomic DNA …
gene expression regulation. Despite their high CpG content and unlike bulk genomic DNA …
Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters
The role of CpG island methylation in normal development and cell differentiation is of keen
interest, but remains poorly understood. We performed comprehensive DNA methylation …
interest, but remains poorly understood. We performed comprehensive DNA methylation …
Sequence determinants, function, and evolution of CpG islands
A Angeloni, O Bogdanovic - Biochemical Society Transactions, 2021 - portlandpress.com
In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with∼
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …
High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions
The majority of mammalian promoters are CpG islands; regions of high CG density that
require protection from DNA methylation to be functional. Importantly, how sequence …
require protection from DNA methylation to be functional. Importantly, how sequence …