Phylogenetic methods in biogeography

F Ronquist, I Sanmartín - Annual Review of Ecology, Evolution …, 2011 - annualreviews.org
Phylogenetic approaches to biogeography are rapidly becoming more sophisticated. Four
types of models are being explored in the literature:(a) diffusion models,(b) island models,(c) …

A likelihood framework for inferring the evolution of geographic range on phylogenetic trees

RH Ree, BR Moore, CO Webb, MJ Donoghue - Evolution, 2005 - Wiley Online Library
At a time when historical biogeography appears to be again expanding its scope after a
period of focusing primarily on discerning area relationships using cladograms, new …

Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses

CL Richards, BC Carstens… - Journal of …, 2007 - Wiley Online Library
Statistical phylogeographic studies contribute to our understanding of the factors that
influence population divergence and speciation, and that ultimately generate …

PHRAPL: phylogeographic inference using approximate likelihoods

ND Jackson, AE Morales, BC Carstens… - Systematic …, 2017 - academic.oup.com
The demographic history of most species is complex, with multiple evolutionary processes
combining to shape the observed patterns of genetic diversity. To infer this history, the …

Directional asymmetry of long‐distance dispersal and colonization could mislead reconstructions of biogeography

LG Cook, MD Crisp - Journal of biogeography, 2005 - Wiley Online Library
Aim Phylogenies are increasingly being used to attempt to answer biogeographical
questions. However, a reliance on tree topology alone has emerged without consideration of …

Prospects and challenges for parametric models in historical biogeographical inference

RH Ree, I Sanmartín - Journal of Biogeography, 2009 - Wiley Online Library
In historical biogeography, phylogenetic trees have long been used as tools for addressing
a wide range of inference problems, from explaining common distribution patterns of species …

Integrating coalescent and ecological niche modeling in comparative phylogeography

BC Carstens, CL Richards - Evolution, 2007 - academic.oup.com
Understanding the factors that contribute to the formation of population genetic structure is a
central goal of phylogeographic research, but achieving this goal can be complicated by the …

Reconstructing ancestral ranges in historical biogeography: properties and prospects

KS Lamm, BD Redelings - Journal of Systematics and Evolution, 2009 - Wiley Online Library
Recent years have witnessed a proliferation of quantitative methods for biogeographic
inference. In particular, novel parametric approaches represent exciting new opportunities …

A likelihood framework for estimating phylogeographic history on a continuous landscape

AR Lemmon, EM Lemmon - Systematic biology, 2008 - academic.oup.com
Due to lack of an adequate statistical framework, biologists studying phylogeography are
abandoning traditional methods of estimating phylogeographic history in favor of statistical …

Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography

F Ronquist - Systematic biology, 1997 - academic.oup.com
Quantification in historical biogeography has usually been based on the search for a single
branching relationship among areas of endemism. Unlike organisms, however, areas rarely …