Downstream Assays for Variant Resolution: Epigenetics, RNA Sequnncing, and Metabolomics

BJ Shayota - Pediatric Clinics, 2023 - pediatric.theclinics.com
Over the past 2 decades, advances in genetic testing methods and the growing availability
of such tests to the general population has been met with a shift in how physicians provide …

Molecular genetic testing and the future of clinical genomics

SH Katsanis, N Katsanis - Nature Reviews Genetics, 2013 - nature.com
Genomic technologies are reaching the point of being able to detect genetic variation in
patients at high accuracy and reduced cost, offering the promise of fundamentally altering …

Opportunities and challenges for the computational interpretation of rare variation in clinically important genes

G McInnes, AG Sharo, ML Koleske, JEH Brown… - The American Journal of …, 2021 - cell.com
Genome sequencing is enabling precision medicine—tailoring treatment to the unique
constellation of variants in an individual's genome. The impact of recurrent pathogenic …

Bridging the gap: the need for genomic and clinical-omics data integration and standardization in overcoming the bottleneck of variant interpretation

LM Furness - Expert Review of Precision Medicine and Drug …, 2017 - Taylor & Francis
Introduction: The arrival of next-generation sequencing has brought about a revolution in
genomic analysis of disease. One of the major bottlenecks delaying uptake of whole exome …

Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

H Gelman, JN Dines, J Berg, AH Berger, S Brnich… - Genome Medicine, 2019 - Springer
Variants of uncertain significance represent a massive challenge to medical genetics.
Multiplexed functional assays, in which the functional effects of thousands of genomic …

Back to the future: from genome to metabolome

JV Thakuria, AW Zaranek, GM Church… - Human Mutation, 2012 - Wiley Online Library
In the traditional medical genetics setting, metabolic disorders, identified either clinically or
through biochemical screening, undergo subsequent single gene testing to molecularly …

Solving the molecular diagnostic testing conundrum for Mendelian disorders in the era of next-generation sequencing: single-gene, gene panel, or exome/genome …

Y Xue, A Ankala, WR Wilcox, MR Hegde - Genetics in Medicine, 2015 - nature.com
Next-generation sequencing is changing the paradigm of clinical genetic testing. Today
there are numerous molecular tests available, including single-gene tests, gene panels, and …

Need for automated interactive genomic interpretation and ongoing reanalysis

M Sarmady, A Abou Tayoun - JAMA pediatrics, 2018 - jamanetwork.com
Traditional genetic testing was based on Sanger sequencing analysis of a single gene at a
time. A clinician would generate a differential diagnosis after synthesizing the patient's …

Integrative omics approaches to advance rare disease diagnostics

D Smirnov, N Konstantinovskiy… - Journal of Inherited …, 2023 - Wiley Online Library
Over the past decade high‐throughput DNA sequencing approaches, namely whole exome
and whole genome sequencing became a standard procedure in Mendelian disease …

Clinical genomics and contextualizing genome variation in the diagnostic laboratory

JR Lupski, P Liu, P Stankiewicz… - Expert review of …, 2020 - Taylor & Francis
Introduction The human genome contains the instructions for the development and
biological homeostasis of the human organism and the genetic transmission of traits …