[HTML][HTML] A one-penny imputed genome from next-generation reference panels

BL Browning, Y Zhou, SR Browning - The American Journal of Human …, 2018 - cell.com
Genotype imputation is commonly performed in genome-wide association studies because it
greatly increases the number of markers that can be tested for association with a trait. In …

Genotype imputation from large reference panels

S Das, GR Abecasis, BL Browning - Annual review of genomics …, 2018 - annualreviews.org
Genotype imputation has become a standard tool in genome-wide association studies
because it enables researchers to inexpensively approximate whole-genome sequence …

Genotype imputation with thousands of genomes

B Howie, J Marchini, M Stephens - G3: Genes| Genomes …, 2011 - academic.oup.com
Genotype imputation is a statistical technique that is often used to increase the power and
resolution of genetic association studies. Imputation methods work by using haplotype …

[HTML][HTML] Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies

K Hao, E Chudin, J McElwee, EE Schadt - BMC genetics, 2009 - Springer
Background Although high-throughput genotyping arrays have made whole-genome
association studies (WGAS) feasible, only a small proportion of SNPs in the human genome …

[HTML][HTML] A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

BN Howie, P Donnelly, J Marchini - PLoS genetics, 2009 - journals.plos.org
Genotype imputation methods are now being widely used in the analysis of genome-wide
association studies. Most imputation analyses to date have used the HapMap as a reference …

Comprehensive assessment of genotype imputation performance

S Shi, N Yuan, M Yang, Z Du, J Wang, X Sheng, J Wu… - Human Heredity, 2019 - karger.com
Genotype imputation is a process of estimating missing ge-notypes from the haplotype or
genotype reference panel. It can effectively boost the power of detecting single nucleotide …

minimac2: faster genotype imputation

C Fuchsberger, GR Abecasis, DA Hinds - Bioinformatics, 2014 - academic.oup.com
Genotype imputation is a key step in the analysis of genome-wide association studies.
Upcoming very large reference panels, such as those from The 1000 Genomes Project and …

MaCH‐Admix: genotype imputation for admixed populations

EY Liu, M Li, W Wang, Y Li - Genetic epidemiology, 2013 - Wiley Online Library
Imputation in admixed populations is an important problem but challenging due to the
complex linkage disequilibrium (LD) pattern. The emergence of large reference panels such …

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

B Howie, C Fuchsberger, M Stephens, J Marchini… - Nature …, 2012 - nature.com
Abstract The 1000 Genomes Project and disease-specific sequencing efforts are producing
large collections of haplotypes that can be used as reference panels for genotype imputation …

[HTML][HTML] Rare variant genotype imputation with thousands of study-specific whole-genome sequences: implications for cost-effective study designs

G Pistis, E Porcu, SI Vrieze, C Sidore, M Steri… - European Journal of …, 2015 - nature.com
The utility of genotype imputation in genome-wide association studies is increasing as
progressively larger reference panels are improved and expanded through whole-genome …