[HTML][HTML] A one-penny imputed genome from next-generation reference panels
Genotype imputation is commonly performed in genome-wide association studies because it
greatly increases the number of markers that can be tested for association with a trait. In …
greatly increases the number of markers that can be tested for association with a trait. In …
Genotype imputation from large reference panels
Genotype imputation has become a standard tool in genome-wide association studies
because it enables researchers to inexpensively approximate whole-genome sequence …
because it enables researchers to inexpensively approximate whole-genome sequence …
Genotype imputation with thousands of genomes
Genotype imputation is a statistical technique that is often used to increase the power and
resolution of genetic association studies. Imputation methods work by using haplotype …
resolution of genetic association studies. Imputation methods work by using haplotype …
[HTML][HTML] Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies
Background Although high-throughput genotyping arrays have made whole-genome
association studies (WGAS) feasible, only a small proportion of SNPs in the human genome …
association studies (WGAS) feasible, only a small proportion of SNPs in the human genome …
[HTML][HTML] A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
BN Howie, P Donnelly, J Marchini - PLoS genetics, 2009 - journals.plos.org
Genotype imputation methods are now being widely used in the analysis of genome-wide
association studies. Most imputation analyses to date have used the HapMap as a reference …
association studies. Most imputation analyses to date have used the HapMap as a reference …
Comprehensive assessment of genotype imputation performance
Genotype imputation is a process of estimating missing ge-notypes from the haplotype or
genotype reference panel. It can effectively boost the power of detecting single nucleotide …
genotype reference panel. It can effectively boost the power of detecting single nucleotide …
minimac2: faster genotype imputation
Genotype imputation is a key step in the analysis of genome-wide association studies.
Upcoming very large reference panels, such as those from The 1000 Genomes Project and …
Upcoming very large reference panels, such as those from The 1000 Genomes Project and …
MaCH‐Admix: genotype imputation for admixed populations
Imputation in admixed populations is an important problem but challenging due to the
complex linkage disequilibrium (LD) pattern. The emergence of large reference panels such …
complex linkage disequilibrium (LD) pattern. The emergence of large reference panels such …
Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
Abstract The 1000 Genomes Project and disease-specific sequencing efforts are producing
large collections of haplotypes that can be used as reference panels for genotype imputation …
large collections of haplotypes that can be used as reference panels for genotype imputation …
[HTML][HTML] Rare variant genotype imputation with thousands of study-specific whole-genome sequences: implications for cost-effective study designs
The utility of genotype imputation in genome-wide association studies is increasing as
progressively larger reference panels are improved and expanded through whole-genome …
progressively larger reference panels are improved and expanded through whole-genome …