[HTML][HTML] From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

BR Ruhfel, MA Gitzendanner, PS Soltis… - BMC evolutionary …, 2014 - Springer
Background Next-generation sequencing has provided a wealth of plastid genome
sequence data from an increasingly diverse set of green plants (Viridiplantae). Although …

Plastid phylogenomic analysis of green plants: a billion years of evolutionary history

MA Gitzendanner, PS Soltis, GKS Wong… - American Journal of …, 2018 - Wiley Online Library
Premise of the Study For the past one billion years, green plants (Viridiplantae) have
dominated global ecosystems, yet many key branches in their evolutionary history remain …

Plastome phylogenetics: 30 years of inferences into plant evolution

MA Gitzendanner, PS Soltis, TS Yi, DZ Li… - Advances in botanical …, 2018 - Elsevier
From restriction site analyses to whole plastid genome sequences, our understanding of
green plant (Viridiplantae;~ 500,000 extant species) evolutionary relationships over the past …

[HTML][HTML] Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

[HTML][HTML] One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

[HTML][HTML] Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and …

F Grewe, W Guo, EA Gubbels, AK Hansen… - BMC Evolutionary …, 2013 - Springer
Background Plastid genome structure and content is remarkably conserved in land plants.
This widespread conservation has facilitated taxon-rich phylogenetic analyses that have …

[HTML][HTML] Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JM Lee, CH Cho, SI Park, JW Choi, HS Song, JA West… - BMC biology, 2016 - Springer
Abstract Background The red algae (Rhodophyta) diverged from the green algae and plants
(Viridiplantae) over one billion years ago within the kingdom Archaeplastida. These …

[HTML][HTML] A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome …

C Lemieux, C Otis, M Turmel - BMC biology, 2007 - Springer
Abstract Background The Viridiplantae comprise two major phyla: the Streptophyta,
containing the charophycean green algae and all land plants, and the Chlorophyta …

[HTML][HTML] Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant …

KG Karol, K Arumuganathan, JL Boore, AM Duffy… - BMC Evolutionary …, 2010 - Springer
Background Despite considerable progress in our understanding of land plant phylogeny,
several nodes in the green tree of life remain poorly resolved. Furthermore, the bulk of …

[HTML][HTML] Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers

J Janouškovec, SL Liu, PT Martone, W Carré… - PloS one, 2013 - journals.plos.org
Red algae have the most gene-rich plastid genomes known, but despite their evolutionary
importance these genomes remain poorly sampled. Here we characterize three complete …