Improvement of prediction ability by integrating multi-omic datasets in barley
Background Genomic prediction (GP) based on single nucleotide polymorphisms (SNP) has
become a broadly used tool to increase the gain of selection in plant breeding. However …
become a broadly used tool to increase the gain of selection in plant breeding. However …
Can metabolic prediction be an alternative to genomic prediction in barley?
MR Gemmer, C Richter, Y Jiang, T Schmutzer… - PLoS …, 2020 - journals.plos.org
Like other crop species, barley, the fourth most important crop worldwide, suffers from the
genetic bottleneck effect, where further improvements in performance through classical …
genetic bottleneck effect, where further improvements in performance through classical …
Transcriptomic and presence/absence variation in the barley genome assessed from multi-tissue mRNA sequencing and their power to predict phenotypic traits
Background Barley is the world's fourth most cultivated cereal and is an important crop
model for genetic studies. One layer of genomic information that remains poorly explored in …
model for genetic studies. One layer of genomic information that remains poorly explored in …
Multi-trait Genomic Prediction Model Increased the Predictive Ability for Agronomic and Malting Quality Traits in Barley (Hordeum vulgare L.)
M Bhatta, L Gutierrez, L Cammarota… - G3: Genes …, 2020 - academic.oup.com
Plant breeders regularly evaluate multiple traits across multiple environments, which opens
an avenue for using multiple traits in genomic prediction models. We assessed the potential …
an avenue for using multiple traits in genomic prediction models. We assessed the potential …
Feature engineering of environmental covariates improves plant genomic-enabled prediction
OA Montesinos-López, L Crespo-Herrera… - Frontiers in Plant …, 2024 - frontiersin.org
Introduction Because Genomic selection (GS) is a predictive methodology, it needs to
guarantee high-prediction accuracies for practical implementations. However, since many …
guarantee high-prediction accuracies for practical implementations. However, since many …
Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport …
Genome-wide predictions are a powerful tool for predicting trait performance. Against this
backdrop we aimed to evaluate the potential and limitations of genome-wide predictions to …
backdrop we aimed to evaluate the potential and limitations of genome-wide predictions to …
Improving genomic prediction for seed quality traits in oat (Avena sativa L.) using trait-specific relationship matrices
The observable phenotype is the manifestation of information that is passed along different
organization levels (transcriptional, translational, and metabolic) of a biological system. The …
organization levels (transcriptional, translational, and metabolic) of a biological system. The …
Multitrait, random regression, or simple repeatability model in high‐throughput phenotyping data improve genomic prediction for wheat grain yield
High‐throughput phenotyping (HTP) platforms can be used to measure traits that are
genetically correlated with wheat (Triticum aestivum L.) grain yield across time. Incorporating …
genetically correlated with wheat (Triticum aestivum L.) grain yield across time. Incorporating …
Multi-trait multi-environment genomic prediction of agronomic traits in advanced breeding lines of winter wheat
Genomic prediction is a promising approach for accelerating the genetic gain of complex
traits in wheat breeding. However, increasing the prediction accuracy (PA) of genomic …
traits in wheat breeding. However, increasing the prediction accuracy (PA) of genomic …
Accelerating wheat breeding for end‐use quality through association mapping and multivariate genomic prediction
In hard‐winter wheat (Triticum aestivum L.) breeding, the evaluation of end‐use quality is
expensive and time‐consuming, being relegated to the final stages of the breeding program …
expensive and time‐consuming, being relegated to the final stages of the breeding program …