Inference of Population Genetic Structure and High Linkage Disequilibrium Among Alternaria spp. Collected from Tomato and Potato Using Genotyping by …

TB Adhikari, BJ Knaus, NJ Grünwald, D Halterman… - bioRxiv, 2019 - biorxiv.org
Genotyping by sequencing (GBS) is considered a powerful tool to discover single nucleotide
polymorphisms (SNPs), which are useful to characterize closely related genomes of plant …

Genotyping-by-Sequencing Reveals Population Differentiation and Linkage Disequilibrium in Alternaria linariae from Tomato

TB Adhikari, BA Olukolu, R Paudel… - …, 2024 - Am Phytopath Society
Alternaria linariae is an economically important foliar pathogen that causes early blight
disease in tomatoes. Understanding genetic diversity, population genetic structure, and …

[HTML][HTML] Genetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin

TB Adhikari, N Muzhinji, D Halterman, FJ Louws - Scientific Reports, 2021 - nature.com
Early blight (EB) caused by Alternaria linariae or Alternaria solani and leaf blight (LB)
caused by A. alternata are economically important diseases of tomato and potato. Little is …

[HTML][HTML] The Population Genetics of Alternaria tenuissima in Four Regions of China as Determined by Microsatellite Markers Obtained by Transcriptome Sequencing

N Yang, G Ma, K Chen, X Wu - Frontiers in microbiology, 2018 - frontiersin.org
A total of 32,284 unigenes were obtained from the transcriptome of Alternaria tenuissima, a
pathogenic fungus causing foliar disease in tomato, using next-generation sequencing …

Gene genealogies provide evidence for genetic divergence and multiple origins in Alternaria spp. collected from tomato and potato in North Carolina and Wisconsin

TB Adhikari, T Ingram, D Halterman, FJ Louws - Phytopathology, 2019 - ars.usda.gov
Fungal plant pathogens belonging to the Genus Alternaria cause diseases of potato and
tomato, including early blight, leaf blight, and stem canker. Samples of Alternaria species …

Gene Genealogies Reveal High Nucleotide Diversity and Admixture Haplotypes Within Three Alternaria Species Associated with Tomato and Potato

TB Adhikari, T Ingram, D Halterman… - Phytopathology, 2020 - Am Phytopath Society
Early blight (EB) and leaf blight are two destructive diseases of tomato in North Carolina
(NC), caused by Alternaria linariae and A. alternata, respectively. During the last decade, EB …

Gapless Genome Assembly of the Potato and Tomato Early Blight Pathogen Alternaria solani

PJ Wolters, L Faino… - Molecular Plant …, 2018 - Am Phytopath Society
The Alternaria genus consists of saprophytic fungi as well as plant-pathogenic species that
have significant economic impact. To date, the genomes of multiple Alternaria species have …

[HTML][HTML] Comparative genomics of Alternaria species provides insights into the pathogenic lifestyle of Alternaria brassicae – a pathogen of the Brassicaceae family

S Rajarammohan, K Paritosh, D Pental, J Kaur - BMC genomics, 2019 - Springer
Background Alternaria brassicae, a necrotrophic pathogen, causes Alternaria Leaf Spot, one
of the economically important diseases of Brassica crops. Many other Alternaria spp. such …

[HTML][HTML] Species diversity and molecular characterization of Alternaria section Alternaria isolates collected mainly from cereal crops in Canada

JR Dettman, QA Eggertson, NE Kim - Frontiers in Microbiology, 2023 - frontiersin.org
Alternaria is often one on the most abundant fungal genera recovered from a wide array of
plant hosts and environmental substrates. Many species within the sub-generic Alternaria …

[HTML][HTML] Population genetic analysis reveals cryptic sex in the phytopathogenic fungus Alternaria alternata

JW Meng, W Zhu, MH He, EJ Wu, GH Duan, YK Xie… - Scientific Reports, 2015 - nature.com
Reproductive mode can impact population genetic dynamics and evolutionary landscape of
plant pathogens as well as on disease epidemiology and management. In this study, we …