With the accumulation of massive data sets from high-throughput experiments and the rapid
emergence of new types of omics data, gene sets have become more diverse and essential …

Abstract Gene Set Enrichment Analysis (GSEA) is a powerful method for interpreting
biological meaning of a list of genes by computing the overlaps with various previously …

Genome‐scale studies using high‐throughput sequencing (HTS) technologies generate
substantial lists of differentially expressed genes under different experimental conditions …

Background After 10-year-use of AFLP (Amplified Fragment Length Polymorphism)
technology for DNA fingerprinting and mRNA profiling, large repertories of genome-and …

Background Since the finishing of the sequencing of the Arabidopsis thaliana genome, the
Arabidopsis community and the annotator centers have been working on the improvement of …

Genome sequences from over 200 plant species have already been published, with this
number expected to increase rapidly due to advances in sequencing technologies. Once a …

Premise The functional annotation of genes is a crucial component of genomic analyses. A
common way to summarize functional annotations is with hierarchical gene ontologies, such …

Plant genome-scale resources are being generated at an increasing rate as sequencing
technologies continue to improve and raw data costs continue to fall; however, the cost of …

Malvaceae is a family of flowering plants containing many economically important plant
species including cotton, cacao and durian. Recently, the genomes of several Malvaceae …

Gene functional descriptions offer a crucial line of evidence for candidate genes underlying
trait variation. Conversely, plant responses to environmental cues represent important …