Methylome diversification through changes in DNA methyltransferase sequence specificity

Y Furuta, H Namba-Fukuyo, TF Shibata… - PLoS …, 2014 - journals.plos.org
Epigenetic modifications such as DNA methylation have large effects on gene expression
and genome maintenance. Helicobacter pylori, a human gastric pathogen, has a large …

The Helicobacter pylori Methylome: Roles in Gene Regulation and Virulence

R Gorrell, T Kwok - Molecular Pathogenesis and Signal Transduction by …, 2017 - Springer
The methylome is defined as a map of DNA methylation patterns at single-base resolution.
DNA methylation in bacteria was first discovered as a function of restriction–modification …

Methylome evolution suggests lineage-dependent selection in the gastric pathogen Helicobacter pylori

F Ailloud, W Gottschall, S Suerbaum - Communications Biology, 2023 - nature.com
The bacterial pathogen Helicobacter pylori, the leading cause of gastric cancer, is
genetically highly diverse and harbours a large and variable portfolio of restriction …

The complete methylome of Helicobacter pylori UM032

WC Lee, BP Anton, S Wang, P Baybayan, S Singh… - BMC genomics, 2015 - Springer
Background The genome of the human gastric pathogen Helicobacter pylori encodes a
large number of DNA methyltransferases (MTases), some of which are shared among many …

The complex methylome of the human gastric pathogen Helicobacter pylori

J Krebes, RD Morgan, B Bunk, C Spröer… - Nucleic acids …, 2014 - academic.oup.com
The genome of Helicobacter pylori is remarkable for its large number of restriction-
modification (RM) systems, and strain-specific diversity in RM systems has been suggested …

The core genome m5C methyltransferase JHP1050 (M.Hpy99III) plays an important role in orchestrating gene expression in Helicobacter pylori

I Estibariz, A Overmann, F Ailloud, J Krebes… - Nucleic acids …, 2019 - academic.oup.com
Helicobacter pylori encodes a large number of restriction–modification (R–M) systems
despite its small genome. R–M systems have been described as 'primitive immune systems' …

Genomic Methylation: a Tool for Typing Helicobacter pylori Isolates

FF Vale, JMB Vítor - Applied and environmental microbiology, 2007 - Am Soc Microbiol
The genome sequences of three Helicobacter pylori strains revealed an abundant number
of putative restriction and modification (RM) systems within a small genome (1.60 to 1.67 …

Population Evolution of Helicobacter pylori through Diversification in DNA Methylation and Interstrain Sequence Homogenization

KK Kojima, Y Furuta, K Yahara… - Molecular biology …, 2016 - academic.oup.com
Decoding of closely related genomes is now revealing the process of population evolution.
In bacteria, population divergence appears associated with a unique set of sequence …

Mobility of DNA sequence recognition domains in DNA methyltransferases suggests epigenetics-driven adaptive evolution

Y Furuta, I Kobayashi - Mobile genetic elements, 2012 - Taylor & Francis
DNA methylation is one of the best studied epigenetic modifications observed in prokaryotes
as well as eukaryotes. It affects nearby gene expression. Most DNA methylation reactions in …

Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
DNA methylation plays a critical role in the regulation of gene expression. The ability to
access the methylation status for a large number of genes or the entire genome should …