Analysis of codon usage patterns in Haloxylon ammodendron based on genomic and transcriptomic data

X Huang, Y Jiao, J Guo, Y Wang, G Chu, M Wang - Gene, 2022 - Elsevier
Haloxylon ammodendron, a xero-halophytic shrub of Chenopodiaceae, is a dominant
species in deserts, which has a strong drought and salt tolerance and plays an important …

Codon usage patterns across seven Rosales species

Y Zhang, Z Shen, X Meng, L Zhang, Z Liu, M Liu… - BMC plant biology, 2022 - Springer
Background Codon usage bias (CUB) analysis is an effective method for studying specificity,
evolutionary relationships, and mRNA translation and discovering new genes among …

Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae

X Li, H Song, Y Kuang, S Chen, P Tian, C Li… - International journal of …, 2016 - mdpi.com
Analysis of codon usage data has both practical and theoretical applications in
understanding the basics of molecular biology. Differences in codon usage patterns among …

Analysis of codon usage patterns in 48 Aconitum species

M Yang, J Liu, W Yang, Z Li, Y Hai, B Duan, H Zhang… - BMC genomics, 2023 - Springer
Abstract Background The Aconitum genus is a crucial member of the Ranunculaceae family.
There are 350 Aconitum species worldwide, with about 170 species found in China. These …

Comparative Analysis of Codon Usage Patterns in Nuclear and Chloroplast Genome of Dalbergia (Fabaceae)

ZK Wang, Y Liu, HY Zheng, MQ Tang, SQ Xie - Genes, 2023 - mdpi.com
The Dalbergia plants are widely distributed across more than 130 tropical and subtropical
countries and have significant economic and medicinal value. Codon usage bias (CUB) is a …

Comparative studies on codon usage bias of Ganoderma lucidum based on analysis of genomic and transcriptomic data

XX Zhu, YJ Zhu, JY Song, C Sun… - Yao xue xue bao= Acta …, 2014 - europepmc.org
Codon usage bias is an important characteristic of genetic information transfer in organisms.
Analysis of codon usage bias of different species is important for understanding the rules on …

[引用][C] Codon usage bias analysis of the genome-wide genes encoded in Agaricus bisporus

LH HAN, DQ DAI, MY ZHAO, C LIU - Mycosystema, 2021 - manu40.magtech.com.cn
Agaricus bisporus is an important species of edible mushrooms. To understand the
influencing factors of codon bias and their relationship with gene expression, the codon …

Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis orthologs

H Song, H Gao, J Liu, P Tian, Z Nan - Scientific reports, 2017 - nature.com
The relationship between evolutionary rates and gene expression in model plant orthologs
is well documented. However, little is known about the relationships between gene …

Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data

C Feng, C Xu, Y Wang, W Liu, X Yin, X Li, M Chen… - BMC genomics, 2013 - Springer
Background Codon usage analysis has been a classical topic for decades and has
significances for studies of evolution, mRNA translation, and new gene discovery, etc. While …

Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species

Y Wang, D Jiang, K Guo, L Zhao, F Meng, J Xiao… - BMC genomic data, 2023 - Springer
Abstract Background The Phenomenon of codon usage bias exists in the genomes of
prokaryotes and eukaryotes. The codon usage pattern is affected by environmental factors …