HIBLUP: an integration of statistical models on the BLUP framework for efficient genetic evaluation using big genomic data
Human diseases and agricultural traits can be predicted by modeling a genetic random
polygenic effect in linear mixed models. To estimate variance components and predict …
polygenic effect in linear mixed models. To estimate variance components and predict …
Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …
Predicted residual error sum of squares of mixed models: an application for genomic prediction
S Xu - G3: Genes, Genomes, Genetics, 2017 - academic.oup.com
Genomic prediction is a statistical method to predict phenotypes of polygenic traits using
high-throughput genomic data. Most diseases and behaviors in humans and animals are …
high-throughput genomic data. Most diseases and behaviors in humans and animals are …
Enhancing genome-enabled prediction by bagging genomic BLUP
We examined whether or not the predictive ability of genomic best linear unbiased
prediction (GBLUP) could be improved via a resampling method used in machine learning …
prediction (GBLUP) could be improved via a resampling method used in machine learning …
A Bayesian method and its variational approximation for prediction of genomic breeding values in multiple traits
T Hayashi, H Iwata - BMC bioinformatics, 2013 - Springer
Background Genomic selection is an effective tool for animal and plant breeding, allowing
effective individual selection without phenotypic records through the prediction of genomic …
effective individual selection without phenotypic records through the prediction of genomic …
Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits
Improvement of statistical methods is crucial for realizing the potential of increasingly dense
genetic markers. Bayesian methods treat all markers as random effects, exhibit an …
genetic markers. Bayesian methods treat all markers as random effects, exhibit an …
Genomic BLUP decoded: a look into the black box of genomic prediction
Genomic best linear unbiased prediction (BLUP) is a statistical method that uses
relationships between individuals calculated from single-nucleotide polymorphisms (SNPs) …
relationships between individuals calculated from single-nucleotide polymorphisms (SNPs) …
The impact of genetic architecture on genome-wide evaluation methods
HD Daetwyler, R Pong-Wong, B Villanueva… - Genetics, 2010 - academic.oup.com
The rapid increase in high-throughput single-nucleotide polymorphism data has led to a
great interest in applying genome-wide evaluation methods to identify an individual's …
great interest in applying genome-wide evaluation methods to identify an individual's …
GAPIT version 2: an enhanced integrated tool for genomic association and prediction
Most human diseases and agriculturally important traits are complex. Dissecting their
genetic architecture requires continued development of innovative and powerful statistical …
genetic architecture requires continued development of innovative and powerful statistical …
Predicting genetic values: a kernel-based best linear unbiased prediction with genomic data
Genomic data provide a valuable source of information for modeling covariance structures,
allowing a more accurate prediction of total genetic values (GVs). We apply the kriging …
allowing a more accurate prediction of total genetic values (GVs). We apply the kriging …