[HTML][HTML] Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study

LJ Pankhurst, C del Ojo Elias, AA Votintseva… - The Lancet …, 2016 - thelancet.com
Background Slow and cumbersome laboratory diagnostics for Mycobacterium tuberculosis
complex (MTBC) risk delayed treatment and poor patient outcomes. Whole-genome …

Evaluation of whole-genome sequencing for mycobacterial species identification and drug susceptibility testing in a clinical setting: a large-scale prospective …

TP Quan, Z Bawa, D Foster, T Walker… - Journal of clinical …, 2018 - Am Soc Microbiol
Use of whole-genome sequencing (WGS) for routine mycobacterial species identification
and drug susceptibility testing (DST) is becoming a reality. We compared the performances …

[HTML][HTML] Mycobacterium tuberculosis and whole-genome sequencing: how close are we to unleashing its full potential?

G Satta, M Lipman, GP Smith, C Arnold, OM Kon… - Clinical Microbiology …, 2018 - Elsevier
Background Nearly two decades after completion of the genome sequence of
Mycobacterium tuberculosis (MTB), and with the advent of next generation sequencing …

Comprehensive whole-genome sequencing and reporting of drug resistance profiles on clinical cases of Mycobacterium tuberculosis in New York State

J Shea, TA Halse, P Lapierre, M Shudt… - Journal of clinical …, 2017 - Am Soc Microbiol
Whole-genome sequencing (WGS) is a newer alternative for tuberculosis (TB) diagnostics
and is capable of providing rapid drug resistance profiles while performing species …

Same-day diagnostic and surveillance data for tuberculosis via whole-genome sequencing of direct respiratory samples

AA Votintseva, P Bradley, L Pankhurst… - Journal of clinical …, 2017 - Am Soc Microbiol
Routine full characterization of Mycobacterium tuberculosis is culture based, taking many
weeks. Whole-genome sequencing (WGS) can generate antibiotic susceptibility profiles to …

Direct whole-genome sequencing of sputum accurately identifies drug-resistant Mycobacterium tuberculosis faster than MGIT culture sequencing

RM Doyle, C Burgess, R Williams… - Journal of clinical …, 2018 - Am Soc Microbiol
The current methods available to diagnose antimicrobial-resistant Mycobacterium
tuberculosis infections require a positive culture or only test a limited number of resistance …

[HTML][HTML] MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates

TA Kohl, C Utpatel, V Schleusener, MR De Filippo… - PeerJ, 2018 - peerj.com
Analyzing whole-genome sequencing data of Mycobacterium tuberculosis complex (MTBC)
isolates in a standardized workflow enables both comprehensive antibiotic resistance …

[HTML][HTML] Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

M Ezewudo, A Borens, Á Chiner-Oms, P Miotto… - Scientific reports, 2018 - nature.com
Drug-resistant tuberculosis poses a persistent public health threat. The ReSeqTB platform is
a collaborative, curated knowledgebase, designed to standardize and aggregate global …

[HTML][HTML] The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples

TH Heupink, L Verboven, A Sharma… - PLoS Computational …, 2023 - journals.plos.org
Background Whole genome sequencing (WGS) holds great potential for the management
and control of tuberculosis. Accurate analysis of samples with low mycobacterial burden …

Clinical value of whole-genome sequencing of Mycobacterium tuberculosis

HE Takiff, O Feo - The Lancet Infectious Diseases, 2015 - thelancet.com
Whole-genome sequencing (WGS) is now common as a result of new technologies that can
rapidly sequence a complete bacterial genome for US $500 or less. Many studies have …