[HTML][HTML] Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
LJ Pankhurst, C del Ojo Elias, AA Votintseva… - The Lancet …, 2016 - thelancet.com
Background Slow and cumbersome laboratory diagnostics for Mycobacterium tuberculosis
complex (MTBC) risk delayed treatment and poor patient outcomes. Whole-genome …
complex (MTBC) risk delayed treatment and poor patient outcomes. Whole-genome …
Evaluation of whole-genome sequencing for mycobacterial species identification and drug susceptibility testing in a clinical setting: a large-scale prospective …
Use of whole-genome sequencing (WGS) for routine mycobacterial species identification
and drug susceptibility testing (DST) is becoming a reality. We compared the performances …
and drug susceptibility testing (DST) is becoming a reality. We compared the performances …
[HTML][HTML] Mycobacterium tuberculosis and whole-genome sequencing: how close are we to unleashing its full potential?
Background Nearly two decades after completion of the genome sequence of
Mycobacterium tuberculosis (MTB), and with the advent of next generation sequencing …
Mycobacterium tuberculosis (MTB), and with the advent of next generation sequencing …
Comprehensive whole-genome sequencing and reporting of drug resistance profiles on clinical cases of Mycobacterium tuberculosis in New York State
J Shea, TA Halse, P Lapierre, M Shudt… - Journal of clinical …, 2017 - Am Soc Microbiol
Whole-genome sequencing (WGS) is a newer alternative for tuberculosis (TB) diagnostics
and is capable of providing rapid drug resistance profiles while performing species …
and is capable of providing rapid drug resistance profiles while performing species …
Same-day diagnostic and surveillance data for tuberculosis via whole-genome sequencing of direct respiratory samples
AA Votintseva, P Bradley, L Pankhurst… - Journal of clinical …, 2017 - Am Soc Microbiol
Routine full characterization of Mycobacterium tuberculosis is culture based, taking many
weeks. Whole-genome sequencing (WGS) can generate antibiotic susceptibility profiles to …
weeks. Whole-genome sequencing (WGS) can generate antibiotic susceptibility profiles to …
Direct whole-genome sequencing of sputum accurately identifies drug-resistant Mycobacterium tuberculosis faster than MGIT culture sequencing
RM Doyle, C Burgess, R Williams… - Journal of clinical …, 2018 - Am Soc Microbiol
The current methods available to diagnose antimicrobial-resistant Mycobacterium
tuberculosis infections require a positive culture or only test a limited number of resistance …
tuberculosis infections require a positive culture or only test a limited number of resistance …
[HTML][HTML] MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates
TA Kohl, C Utpatel, V Schleusener, MR De Filippo… - PeerJ, 2018 - peerj.com
Analyzing whole-genome sequencing data of Mycobacterium tuberculosis complex (MTBC)
isolates in a standardized workflow enables both comprehensive antibiotic resistance …
isolates in a standardized workflow enables both comprehensive antibiotic resistance …
[HTML][HTML] Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase
M Ezewudo, A Borens, Á Chiner-Oms, P Miotto… - Scientific reports, 2018 - nature.com
Drug-resistant tuberculosis poses a persistent public health threat. The ReSeqTB platform is
a collaborative, curated knowledgebase, designed to standardize and aggregate global …
a collaborative, curated knowledgebase, designed to standardize and aggregate global …
[HTML][HTML] The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples
TH Heupink, L Verboven, A Sharma… - PLoS Computational …, 2023 - journals.plos.org
Background Whole genome sequencing (WGS) holds great potential for the management
and control of tuberculosis. Accurate analysis of samples with low mycobacterial burden …
and control of tuberculosis. Accurate analysis of samples with low mycobacterial burden …
Clinical value of whole-genome sequencing of Mycobacterium tuberculosis
HE Takiff, O Feo - The Lancet Infectious Diseases, 2015 - thelancet.com
Whole-genome sequencing (WGS) is now common as a result of new technologies that can
rapidly sequence a complete bacterial genome for US $500 or less. Many studies have …
rapidly sequence a complete bacterial genome for US $500 or less. Many studies have …