Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)

T Marcussen, KS Jakobsen, J Danihelka… - Systematic …, 2012 - academic.oup.com
The phylogenies of allopolyploids take the shape of networks and cannot be adequately
represented as bifurcating trees. Especially for high polyploids (ie, organisms with more than …

From Gene Trees to a Dated Allopolyploid Network: Insights from the Angiosperm Genus Viola (Violaceae)

T Marcussen, L Heier, AK Brysting… - Systematic …, 2015 - academic.oup.com
Allopolyploidization accounts for a significant fraction of speciation events in many
eukaryotic lineages. However, existing phylogenetic and dating methods require tree-like …

Evolutionary relationships, interisland biogeography, and molecular evolution in the Hawaiian violets (Viola: Violaceae)

JC Havran, KJ Sytsma… - American Journal of …, 2009 - Wiley Online Library
The endemic Hawaiian flora offers remarkable opportunities to study the patterns of plant
morphological and molecular evolution. The Hawaiian violets are a monophyletic lineage of …

Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)

YJK Bertrand, AC Scheen, T Marcussen… - Systematic …, 2015 - academic.oup.com
There is a rising awareness that species trees are best inferred from multiple loci while
taking into account processes affecting individual gene trees, such as substitution model …

Inferring polyploid phylogenies from multiply-labeled gene trees

M Lott, A Spillner, KT Huber, A Petri, B Oxelman… - BMC evolutionary …, 2009 - Springer
Background Gene trees that arise in the context of reconstructing the evolutionary history of
polyploid species are often multiply-labeled, that is, the same leaf label can occur several …

Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America

S Joly, A Bruneau - Systematic Biology, 2006 - academic.oup.com
Allelic variation within individuals holds information regarding the relationships of
organisms, which is expected to be particularly important for reconstructing the evolutionary …

EVOLUTION AND BIOGEOGRAPHY OF THE WOODY HAWAIIAN VIOLETS (VIOLA, VIOLACEAE): ARCTIC ORIGINS, HERBACEOUS ANCESTRY AND BIRD …

HE Ballard Jr, KJ Sytsma - Evolution, 2000 - academic.oup.com
Abstract Specialists studying the genus Viola have consistently allied the Hawaiian violets
comprising section Nosphinium—most of which are subshrubs or treelets—with putatively …

A permutation approach for inferring species networks from gene trees in polyploid complexes by minimising deep coalescences

C Oberprieler, F Wagner, S Tomasello… - Methods in Ecology …, 2017 - Wiley Online Library
Context and purpose. Due to ubiquity of polyploid species formation in angiosperms,
reconstructing the evolutionary history of polyploid complexes is at the forefront of …

Untying Gordian knots: unraveling reticulate polyploid plant evolution by genomic data using the large Ranunculus auricomus species complex

K Karbstein, S Tomasello, L Hodač, N Wagner… - New …, 2022 - Wiley Online Library
Speciation via hybridization and polyploidization is a major evolutionary force in plant
evolution but is still poorly understood for neopolyploid groups. Challenges are attributed to …

Interaction among ploidy, breeding system and lineage diversification

R Zenil‐Ferguson, JG Burleigh, WA Freyman… - New …, 2019 - Wiley Online Library
If particular traits consistently affect rates of speciation and extinction, broad
macroevolutionary patterns can be interpreted as consequences of selection at high levels …