Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids

V Sarilar, PM Palacios, A Rousselet, C Ridel… - New …, 2013 - Wiley Online Library
The role played by whole‐genome duplication (WGD) in evolution and adaptation is
particularly well illustrated in allopolyploids, where WGD is concomitant with interspecific …

Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus

KA Bird, CE Niederhuth, S Ou, M Gehan… - New …, 2021 - Wiley Online Library
Allopolyploidisation merges evolutionarily distinct parental genomes (subgenomes) into a
single nucleus. A frequent observation is that one subgenome is 'dominant'over the other …

Impact of transposable elements on the organization and function of allopolyploid genomes

C Parisod, K Alix, J Just, M Petit, V Sarilar… - New …, 2010 - Wiley Online Library
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …

Homoeologous exchanges cause extensive dosage‐dependent gene expression changes in an allopolyploid crop

A Lloyd, A Blary, D Charif, C Charpentier… - New …, 2018 - Wiley Online Library
Structural variation is a major source of genetic diversity and an important substrate for
selection. In allopolyploids, homoeologous exchanges (ie between the constituent …

Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa

F Cheng, C Sun, J Wu, J Schnable… - New …, 2016 - Wiley Online Library
Subgenome dominance is an important phenomenon observed in allopolyploids after whole
genome duplication, in which one subgenome retains more genes as well as contributes …

Analysis of gene expression in resynthesized Brassica napus allotetraploids: transcriptional changes do not explain differential protein regulation

A Marmagne, P Brabant, H Thiellement… - New phytologist, 2010 - Wiley Online Library
Polyploidy, or whole genome duplication, is a major evolutionary process that has shaped
eukaryotic genomes, notably those of flowering plants. The mechanisms underlying the …

Homoeolog expression bias and expression level dominance in resynthesized allopolyploid Brassica napus

J Wu, L Lin, M Xu, P Chen, D Liu, Q Sun, L Ran… - BMC genomics, 2018 - Springer
Background Allopolyploids require rapid genetic and epigenetic modifications to reconcile
two or more sets of divergent genomes. To better understand the fate of duplicate genes …

The lack of negative association between TE load and subgenome dominance in synthesized Brassica allotetraploids

K Zhang, L Zhang, Y Cui, Y Yang… - Proceedings of the …, 2023 - National Acad Sciences
Polyploidization is important to the evolution of plants. Subgenome dominance is a distinct
phenomenon associated with most allopolyploids. A gene on the dominant subgenome …

Patterns of Sequence Loss and Cytosine Methylation within a Population of Newly Resynthesized Brassica napus Allopolyploids

LN Lukens, JC Pires, E Leon, R Vogelzang… - Plant …, 2006 - academic.oup.com
Allopolyploid formation requires the adaptation of two nuclear genomes within a single
cytoplasm, which may involve programmed genetic and epigenetic changes during the …

Surviving a Genome Collision: Genomic Signatures of Allopolyploidization in the Recent Crop Species Brassica napus

B Samans, B Chalhoub, RJ Snowdon - The plant genome, 2017 - Wiley Online Library
Polyploidization has played a major role in crop plant evolution, leading to advantageous
traits that have been selected by humans. Here, we describe restructuring patterns in the …