BrainPy, a flexible, integrative, efficient, and extensible framework for general-purpose brain dynamics programming

C Wang, T Zhang, X Chen, S He, S Li, S Wu - Elife, 2023 - elifesciences.org
Elucidating the intricate neural mechanisms underlying brain functions requires integrative
brain dynamics modeling. To facilitate this process, it is crucial to develop a general-purpose …

BrainPy: a flexible, integrative, efficient, and extensible framework towards general-purpose brain dynamics programming

C Wang, X Chen, T Zhang, S Wu - bioRxiv, 2022 - biorxiv.org
The neural mechanisms underlying brain functions are extremely complicated. Brain
dynamics modeling is an indispensable tool for elucidating these mechanisms by modeling …

[HTML][HTML] Nengo: a Python tool for building large-scale functional brain models

T Bekolay, J Bergstra, E Hunsberger… - Frontiers in …, 2014 - frontiersin.org
Neuroscience currently lacks a comprehensive theory of how cognitive processes can be
implemented in a biological substrate. The Neural Engineering Framework (NEF) proposes …

[HTML][HTML] DynaSim: a MATLAB toolbox for neural modeling and simulation

JS Sherfey, AE Soplata, S Ardid, EA Roberts… - Frontiers in …, 2018 - frontiersin.org
DynaSim is an open-source MATLAB/GNU Octave toolbox for rapid prototyping of neural
models and batch simulation management. It is designed to speed up and simplify the …

[HTML][HTML] Trends in programming languages for neuroscience simulations

AP Davison, M Hines, E Muller - Frontiers in neuroscience, 2009 - frontiersin.org
Neuroscience simulators allow scientists to express models in terms of biological concepts,
without having to concern themselves with low-level computational details of their …

[PDF][PDF] Integrating model development across computational neuroscience, cognitive science, and machine learning

P Gleeson, S Crook, D Turner, K Mantel, M Raunak… - Neuron, 2023 - cell.com
Neuroscience, cognitive science, and computer science are increasingly benefiting through
their interactions. This could be accelerated by direct sharing of computational models …

[HTML][HTML] The Virtual Brain: a simulator of primate brain network dynamics

P Sanz Leon, SA Knock, MM Woodman… - Frontiers in …, 2013 - frontiersin.org
We present The Virtual Brain (TVB), a neuroinformatics platform for full brain network
simulations using biologically realistic connectivity. This simulation environment enables the …

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience

RA McDougal, TM Morse, T Carnevale… - Journal of computational …, 2017 - Springer
Neuron modeling may be said to have originated with the Hodgkin and Huxley action
potential model in 1952 and Rall's models of integrative activity of dendrites in 1964. Over …

[PDF][PDF] Open source brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits

P Gleeson, M Cantarelli, B Marin, A Quintana… - Neuron, 2019 - cell.com
Computational models are powerful tools for exploring the properties of complex biological
systems. In neuroscience, data-driven models of neural circuits that span multiple scales are …

[HTML][HTML] Generative models of brain dynamics

M Ramezanian-Panahi, G Abrevaya… - Frontiers in Artificial …, 2022 - frontiersin.org
Biologically-and physically-informed models of neuronal dynamics have been advancing
since the mid-twentieth century. Recent developments in artificial intelligence (AI) have …