GENCODE reference annotation for the human and mouse genomes
The accurate identification and description of the genes in the human and mouse genomes
is a fundamental requirement for high quality analysis of data informing both genome …
is a fundamental requirement for high quality analysis of data informing both genome …
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari… - Genome …, 2012 - genome.cshlp.org
The GENCODE Consortium aims to identify all gene features in the human genome using a
combination of computational analysis, manual annotation, and experimental validation …
combination of computational analysis, manual annotation, and experimental validation …
Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation
S Pujar, NA O'Leary, CM Farrell… - Nucleic Acids …, 2018 - academic.oup.com
Abstract The Consensus Coding Sequence (CCDS) project provides a dataset of protein-
coding regions that are identically annotated on the human and mouse reference genome …
coding regions that are identically annotated on the human and mouse reference genome …
GENCODE: reference annotation for the human and mouse genomes in 2023
GENCODE produces high quality gene and transcript annotation for the human and mouse
genomes. All GENCODE annotation is supported by experimental data and serves as a …
genomes. All GENCODE annotation is supported by experimental data and serves as a …
GENCODE: producing a reference annotation for ENCODE
J Harrow, F Denoeud, A Frankish, A Reymond… - Genome biology, 2006 - Springer
Background The GENCODE consortium was formed to identify and map all protein-coding
genes within the ENCODE regions. This was achieved by a combination of initial manual …
genes within the ENCODE regions. This was achieved by a combination of initial manual …
The state of play in higher eukaryote gene annotation
JM Mudge, J Harrow - Nature Reviews Genetics, 2016 - nature.com
A genome sequence is worthless if it cannot be deciphered; therefore, efforts to describe—
or'annotate'—genes began as soon as DNA sequences became available. Whereas early …
or'annotate'—genes began as soon as DNA sequences became available. Whereas early …
Current status and new features of the Consensus Coding Sequence database
CM Farrell, NA O'Leary, RA Harte… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Consensus Coding Sequence (CCDS) project (http://www. ncbi. nlm. nih.
gov/CCDS/) is a collaborative effort to maintain a dataset of protein-coding regions that are …
gov/CCDS/) is a collaborative effort to maintain a dataset of protein-coding regions that are …
The Ensembl automatic gene annotation system
As more genomes are sequenced, there is an increasing need for automated first-pass
annotation which allows timely access to important genomic information. The Ensembl gene …
annotation which allows timely access to important genomic information. The Ensembl gene …
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
KD Pruitt, J Harrow, RA Harte, C Wallin… - Genome …, 2009 - genome.cshlp.org
Effective use of the human and mouse genomes requires reliable identification of genes and
their products. Although multiple public resources provide annotation, different methods are …
their products. Although multiple public resources provide annotation, different methods are …
ORegAnno: an open-access community-driven resource for regulatory annotation
OL Griffith, SB Montgomery, B Bernier… - Nucleic acids …, 2007 - academic.oup.com
ORegAnno is an open-source, open-access database and literature curation system for
community-based annotation of experimentally identified DNA regulatory regions …
community-based annotation of experimentally identified DNA regulatory regions …