[HTML][HTML] Integrating structure-based approaches in generative molecular design

M Thomas, A Bender, C de Graaf - Current Opinion in Structural Biology, 2023 - Elsevier
Generative molecular design for drug discovery and development has seen a recent
resurgence promising to improve the efficiency of the design-make-test-analyse cycle; by …

[HTML][HTML] De novo molecular design and generative models

J Meyers, B Fabian, N Brown - Drug discovery today, 2021 - Elsevier
Molecular design strategies are integral to therapeutic progress in drug discovery.
Computational approaches for de novo molecular design have been developed over the …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

The synthesizability of molecules proposed by generative models

W Gao, CW Coley - Journal of chemical information and modeling, 2020 - ACS Publications
The discovery of functional molecules is an expensive and time-consuming process,
exemplified by the rising costs of small molecule therapeutic discovery. One class of …

[HTML][HTML] Generative artificial intelligence for de novo protein design

A Winnifrith, C Outeiral, BL Hie - Current Opinion in Structural Biology, 2024 - Elsevier
Engineering new molecules with desirable functions and properties has the potential to
extend our ability to engineer proteins beyond what nature has so far evolved. Advances in …

Benchmarking Generated Poses: How Rational is Structure-based Drug Design with Generative Models?

C Harris, K Didi, AR Jamasb, CK Joshi… - arXiv preprint arXiv …, 2023 - arxiv.org
Deep generative models for structure-based drug design (SBDD), where molecule
generation is conditioned on a 3D protein pocket, have received considerable interest in …

Generative models should at least be able to design molecules that dock well: A new benchmark

T Cieplinski, T Danel, S Podlewska… - Journal of Chemical …, 2023 - ACS Publications
Designing compounds with desired properties is a key element of the drug discovery
process. However, measuring progress in the field has been challenging due to the lack of …

[HTML][HTML] De novo generation of hit-like molecules from gene expression signatures using artificial intelligence

O Méndez-Lucio, B Baillif, DA Clevert… - Nature …, 2020 - nature.com
Finding new molecules with a desired biological activity is an extremely difficult task. In this
context, artificial intelligence and generative models have been used for molecular de novo …

Silvr: Guided diffusion for molecule generation

NT Runcie, ASJS Mey - Journal of chemical information and …, 2023 - ACS Publications
Computationally generating new synthetically accessible compounds with high affinity and
low toxicity is a great challenge in drug design. Machine learning models beyond …

Retrieval-based controllable molecule generation

Z Wang, W Nie, Z Qiao, C Xiao, R Baraniuk… - arXiv preprint arXiv …, 2022 - arxiv.org
Generating new molecules with specified chemical and biological properties via generative
models has emerged as a promising direction for drug discovery. However, existing …