ConfSolv: Prediction of Solute Conformer-Free Energies across a Range of Solvents

L Pattanaik, A Menon, V Settels… - The Journal of …, 2023 - ACS Publications
Predicting Gibbs free energy of solution is key to understanding the solvent effects on
thermodynamics and reaction rates for kinetic modeling. Accurately computing solution free …

Graph-based approaches for predicting solvation energy in multiple solvents: open datasets and machine learning models

L Ward, N Dandu, B Blaiszik, B Narayanan… - The Journal of …, 2021 - ACS Publications
The solvation properties of molecules, often estimated using quantum chemical simulations,
are important in the synthesis of energy storage materials, drugs, and industrial chemicals …

Exploring novel directions in free energy calculations

KA Armacost, S Riniker, Z Cournia - Journal of Chemical …, 2020 - ACS Publications
Recognizing the recent developments and applications of free energy methods, the Journal
of Chemical Information and Modeling extended an open invitation to the computational …

Machine learning from quantum chemistry to predict experimental solvent effects on reaction rates

Y Chung, WH Green - Chemical Science, 2024 - pubs.rsc.org
Fast and accurate prediction of solvent effects on reaction rates are crucial for kinetic
modeling, chemical process design, and high-throughput solvent screening. Despite the …

[HTML][HTML] Machine learning of free energies in chemical compound space using ensemble representations: Reaching experimental uncertainty for solvation

J Weinreich, NJ Browning… - The Journal of Chemical …, 2021 - pubs.aip.org
Free energies govern the behavior of soft and liquid matter, and improving their predictions
could have a large impact on the development of drugs, electrolytes, or homogeneous …

Solvation entropy, enthalpy and free energy prediction using a multi-task deep learning functional in 1D-RISM

DJ Fowles, DS Palmer - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
Simultaneous calculation of entropies, enthalpies and free energies has been a long-
standing challenge in computational chemistry, partly because of the difficulty in obtaining …

Treating entropy and conformational changes in implicit solvent simulations of small molecules

DL Mobley, KA Dill, JD Chodera - The Journal of Physical …, 2008 - ACS Publications
Implicit solvent models are increasingly popular for estimating aqueous solvation (hydration)
free energies in molecular simulations and other applications. In many cases, parameters for …

Delfos: deep learning model for prediction of solvation free energies in generic organic solvents

H Lim, YJ Jung - Chemical science, 2019 - pubs.rsc.org
Prediction of aqueous solubilities or hydration free energies is an extensively studied area in
machine learning applications in chemistry since water is the sole solvent in the living …

Predicting solvation free energies with an implicit solvent machine learning potential

S Röcken, AF Burnet, J Zavadlav - arXiv preprint arXiv:2406.00183, 2024 - arxiv.org
Machine learning (ML) potentials are a powerful tool in molecular modeling, enabling ab
initio accuracy for comparably small computational costs. Nevertheless, all-atom simulations …

Teaching free energy calculations to learn from experimental data

M Wieder, J Fass, JD Chodera - bioRxiv, 2021 - biorxiv.org
Alchemical free energy calculations are an important tool in the computational chemistry tool-
box, enabling the efficient calculation of quantities critical for drug discovery such as ligand …