ConfSolv: Prediction of Solute Conformer-Free Energies across a Range of Solvents
L Pattanaik, A Menon, V Settels… - The Journal of …, 2023 - ACS Publications
Predicting Gibbs free energy of solution is key to understanding the solvent effects on
thermodynamics and reaction rates for kinetic modeling. Accurately computing solution free …
thermodynamics and reaction rates for kinetic modeling. Accurately computing solution free …
Graph-based approaches for predicting solvation energy in multiple solvents: open datasets and machine learning models
The solvation properties of molecules, often estimated using quantum chemical simulations,
are important in the synthesis of energy storage materials, drugs, and industrial chemicals …
are important in the synthesis of energy storage materials, drugs, and industrial chemicals …
Exploring novel directions in free energy calculations
Recognizing the recent developments and applications of free energy methods, the Journal
of Chemical Information and Modeling extended an open invitation to the computational …
of Chemical Information and Modeling extended an open invitation to the computational …
Machine learning from quantum chemistry to predict experimental solvent effects on reaction rates
Fast and accurate prediction of solvent effects on reaction rates are crucial for kinetic
modeling, chemical process design, and high-throughput solvent screening. Despite the …
modeling, chemical process design, and high-throughput solvent screening. Despite the …
[HTML][HTML] Machine learning of free energies in chemical compound space using ensemble representations: Reaching experimental uncertainty for solvation
J Weinreich, NJ Browning… - The Journal of Chemical …, 2021 - pubs.aip.org
Free energies govern the behavior of soft and liquid matter, and improving their predictions
could have a large impact on the development of drugs, electrolytes, or homogeneous …
could have a large impact on the development of drugs, electrolytes, or homogeneous …
Solvation entropy, enthalpy and free energy prediction using a multi-task deep learning functional in 1D-RISM
DJ Fowles, DS Palmer - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
Simultaneous calculation of entropies, enthalpies and free energies has been a long-
standing challenge in computational chemistry, partly because of the difficulty in obtaining …
standing challenge in computational chemistry, partly because of the difficulty in obtaining …
Treating entropy and conformational changes in implicit solvent simulations of small molecules
Implicit solvent models are increasingly popular for estimating aqueous solvation (hydration)
free energies in molecular simulations and other applications. In many cases, parameters for …
free energies in molecular simulations and other applications. In many cases, parameters for …
Delfos: deep learning model for prediction of solvation free energies in generic organic solvents
Prediction of aqueous solubilities or hydration free energies is an extensively studied area in
machine learning applications in chemistry since water is the sole solvent in the living …
machine learning applications in chemistry since water is the sole solvent in the living …
Predicting solvation free energies with an implicit solvent machine learning potential
S Röcken, AF Burnet, J Zavadlav - arXiv preprint arXiv:2406.00183, 2024 - arxiv.org
Machine learning (ML) potentials are a powerful tool in molecular modeling, enabling ab
initio accuracy for comparably small computational costs. Nevertheless, all-atom simulations …
initio accuracy for comparably small computational costs. Nevertheless, all-atom simulations …
Teaching free energy calculations to learn from experimental data
M Wieder, J Fass, JD Chodera - bioRxiv, 2021 - biorxiv.org
Alchemical free energy calculations are an important tool in the computational chemistry tool-
box, enabling the efficient calculation of quantities critical for drug discovery such as ligand …
box, enabling the efficient calculation of quantities critical for drug discovery such as ligand …