A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
Genomic selection is an integral tool for breeders to accurately select plants directly from
genotype data leading to faster and more resource-efficient breeding programs. Several …
genotype data leading to faster and more resource-efficient breeding programs. Several …
[HTML][HTML] Plant genotype to phenotype prediction using machine learning
Genomic prediction tools support crop breeding based on statistical methods, such as the
genomic best linear unbiased prediction (GBLUP). However, these tools are not designed to …
genomic best linear unbiased prediction (GBLUP). However, these tools are not designed to …
A review of deep learning applications for genomic selection
OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …
methods have been proposed including the standard additive genetic effect model for which …
Design of training populations for selective phenotyping in genomic prediction
D Akdemir, J Isidro-Sánchez - Scientific reports, 2019 - nature.com
Phenotyping is the current bottleneck in plant breeding, especially because next-generation
sequencing has decreased genotyping cost more than 100.000 fold in the last 20 years …
sequencing has decreased genotyping cost more than 100.000 fold in the last 20 years …
A deep convolutional neural network approach for predicting phenotypes from genotypes
Main conclusion Deep learning is a promising technology to accurately select individuals
with high phenotypic values based on genotypic data. Abstract Genomic selection (GS) is a …
with high phenotypic values based on genotypic data. Abstract Genomic selection (GS) is a …
[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data
H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …
the breeding cycle in major crops relevant for sustaining present demands for food, feed …
The pursuit of genetic gain in agricultural crops through the application of machine-learning to genomic prediction
D Jones, R Fornarelli, M Derbyshire, M Gibberd… - Frontiers in …, 2023 - frontiersin.org
Current practice in agriculture applies genomic prediction to assist crop breeding in the
analysis of genetic marker data. Genomic selection methods typically use linear mixed …
analysis of genetic marker data. Genomic selection methods typically use linear mixed …
A new deep learning calibration method enhances genome-based prediction of continuous crop traits
OA Montesinos-López, A Montesinos-López… - Frontiers in …, 2021 - frontiersin.org
Genomic selection (GS) has the potential to revolutionize predictive plant breeding. A
reference population is phenotyped and genotyped to train a statistical model that is used to …
reference population is phenotyped and genotyped to train a statistical model that is used to …
Genomic prediction using machine learning: a comparison of the performance of regularized regression, ensemble, instance-based and deep learning methods on …
Background The accurate prediction of genomic breeding values is central to genomic
selection in both plant and animal breeding studies. Genomic prediction involves the use of …
selection in both plant and animal breeding studies. Genomic prediction involves the use of …
[HTML][HTML] Comparing genomic prediction models by means of cross validation
MF Schrauf, G de Los Campos, S Munilla - Frontiers in Plant Science, 2021 - frontiersin.org
In the two decades of continuous development of genomic selection, a great variety of
models have been proposed to make predictions from the information available in dense …
models have been proposed to make predictions from the information available in dense …
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