[HTML][HTML] Molecular docking in organic, inorganic, and hybrid systems: a tutorial review

M Mohanty, PS Mohanty - Monatshefte für Chemie-Chemical Monthly, 2023 - Springer
Molecular docking simulation is a very popular and well-established computational
approach and has been extensively used to understand molecular interactions between a …

DockingApp: a user friendly interface for facilitated docking simulations with AutoDock Vina

E Di Muzio, D Toti, F Polticelli - Journal of Computer-Aided Molecular …, 2017 - Springer
Molecular docking is a powerful technique that helps uncover the structural and energetic
bases of the interaction between macromolecules and substrates, endogenous and …

Molecular docking: principles, advances, and its applications in drug discovery

MT Muhammed, E Aki-Yalcin - Letters in Drug Design & …, 2024 - ingentaconnect.com
Molecular docking is a structure-based computational method that generates the binding
pose and affinity between ligands and targets. There are many powerful docking programs …

Effect of input differences on the results of docking calculations

M Feher, CI Williams - Journal of chemical information and …, 2009 - ACS Publications
The sensitivity of docking calculations to the geometry of the input ligand was studied. It was
found that even small changes in the ligand input conformation can lead to large differences …

Use of molecular docking computational tools in drug discovery

F Stanzione, I Giangreco, JC Cole - Progress in medicinal chemistry, 2021 - Elsevier
Molecular docking has become an important component of the drug discovery process.
Since first being developed in the 1980s, advancements in the power of computer hardware …

[PDF][PDF] Basics, types and applications of molecular docking: A review

K Raval, T Ganatra - IP International Journal of Comprehensive …, 2022 - researchgate.net
From hit discovery through lead optimization and beyond, computational methods have
become an essential part of many drugs development processes. There are typically several …

Three-dimensional similarity in molecular docking: prioritizing ligand poses on the basis of experimental binding modes

A Anighoro, J Bajorath - Journal of Chemical Information and …, 2016 - ACS Publications
Molecular docking is the premier approach to structure-based virtual screening. While ligand
posing is often successful, compound ranking using force field-based scoring functions …

A review on molecular docking

OK Vasant, MA Chandrakant… - … Journal of Pure …, 2021 - eprint.subtopublish.com
Molecular docking is computational modeling of structure complexes formed by two or more
interacting molecule. The goal of molecular docking is prediction of three dimensional …

The latest automated docking technologies for novel drug discovery

J Caballero - Expert opinion on drug discovery, 2021 - Taylor & Francis
Introduction Molecular docking has been consolidated as one of the most important methods
in the molecular modeling field. It has been recognized as a prominent tool in the study of …

Molecular docking using quantum mechanical-based methods

MG Aucar, CN Cavasotto - Quantum Mechanics in Drug Discovery, 2020 - Springer
Computational methods are a powerful and consolidated tool in the early stage of the drug
lead discovery process. Among these techniques, high-throughput molecular docking has …