i6mA-Caps: A CapsuleNet-based framework for identifying DNA N6-methyladenine sites

MU Rehman, H Tayara, Q Zou, KT Chong - Bioinformatics, 2022 - academic.oup.com
Abstract Motivation DNA N6-methyladenine (6mA) has been demonstrated to have an
essential function in epigenetic modification in eukaryotic species in recent research. 6mA …

[HTML][HTML] Deep6mA: a deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species

Z Li, H Jiang, L Kong, Y Chen, K Lang… - PLoS computational …, 2021 - journals.plos.org
N6-methyladenine (6mA) is an important DNA modification form associated with a wide
range of biological processes. Identifying accurately 6mA sites on a genomic scale is crucial …

Spinenet-6ma: A novel deep learning tool for predicting dna n6-methyladenine sites in genomes

Z Abbas, H Tayara, K to Chong - IEEE Access, 2020 - ieeexplore.ieee.org
DNA N6-methyladenine (6mA) has subsequently been identified as an important epigenetic
modification which plays an important role in various cellular processes. The precise …

iIM-CNN: intelligent identifier of 6mA sites on different species by using convolution neural network

A Wahab, SD Ali, H Tayara, KT Chong - IEEE Access, 2019 - ieeexplore.ieee.org
DNA N6-methyladenine (6mA) is related to a vast range of biological progress like
transcription, replication, and repair of DNA. The precise discrimination of the 6mA sites …

[HTML][HTML] DNN-m6A: a cross-species method for identifying RNA N6-methyladenosine sites based on deep neural network with multi-information fusion

L Zhang, X Qin, M Liu, Z Xu, G Liu - Genes, 2021 - mdpi.com
As a prevalent existing post-transcriptional modification of RNA, N6-methyladenosine (m6A)
plays a crucial role in various biological processes. To better radically reveal its regulatory …

Deep transformers and convolutional neural network in identifying DNA N6-methyladenine sites in cross-species genomes

NQK Le, QT Ho - Methods, 2022 - Elsevier
As one of the most common post-transcriptional epigenetic modifications, N6-methyladenine
(6 mA), plays an essential role in various cellular processes and disease pathogenesis …

BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches

S Tsukiyama, MM Hasan, HW Deng… - Briefings in …, 2022 - academic.oup.com
Abstract N6-methyladenine (6mA) is associated with important roles in DNA replication,
DNA repair, transcription, regulation of gene expression. Several experimental methods …

6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes

H Xu, R Hu, P Jia, Z Zhao - Bioinformatics, 2020 - academic.oup.com
Abstract Motivation DNA N6-methyladenine (6 mA) has recently been found as an essential
epigenetic modification, playing its roles in a variety of cellular processes. The abnormal …

[HTML][HTML] TS-m6A-DL: Tissue-specific identification of N6-methyladenosine sites using a universal deep learning model

Z Abbas, H Tayara, Q Zou, KT Chong - Computational and structural …, 2021 - Elsevier
The most communal post-transcriptional modification, N6-methyladenosine (m6A), is
associated with a number of crucial biological processes. The precise detection of m6A sites …

Deep6mAPred: A CNN and Bi-LSTM-based deep learning method for predicting DNA N6-methyladenosine sites across plant species

X Tang, P Zheng, X Li, H Wu, DQ Wei, Y Liu, G Huang - Methods, 2022 - Elsevier
Abstract DNA N6-methyladenine (6mA) is a key DNA modification, which plays versatile
roles in the cellular processes, including regulation of gene expression, DNA repair, and …