Keystone taxa as drivers of microbiome structure and functioning
S Banerjee, K Schlaeppi… - Nature Reviews …, 2018 - nature.com
Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have
shown that microbial communities harbour keystone taxa, which drive community …
shown that microbial communities harbour keystone taxa, which drive community …
Identifying keystone species in microbial communities using deep learning
Previous studies suggested that microbial communities can harbour keystone species
whose removal can cause a dramatic shift in microbiome structure and functioning. Yet, an …
whose removal can cause a dramatic shift in microbiome structure and functioning. Yet, an …
Keystone taxa predict compositional change in microbial communities
CM Herren, KD McMahon - Environmental Microbiology, 2018 - Wiley Online Library
The influence of biotic interactions on microbial community assembly is intensely debated.
We hypothesized that keystone taxa, which influence community assembly through strong …
We hypothesized that keystone taxa, which influence community assembly through strong …
Top-down identification of keystone taxa in the microbiome
Keystone taxa in ecological communities are native taxa that play an especially important
role in the stability of their ecosystem. However, we still lack an effective framework for …
role in the stability of their ecosystem. However, we still lack an effective framework for …
Beyond the Venn diagram: the hunt for a core microbiome
A Shade, J Handelsman - Environmental microbiology, 2012 - Wiley Online Library
Discovering a core microbiome is important for understanding the stable, consistent
components across complex microbial assemblages. A core is typically defined as the suite …
components across complex microbial assemblages. A core is typically defined as the suite …
Nutritional and host environments determine community ecology and keystone species in a synthetic gut bacterial community
AS Weiss, LS Niedermeier, A von Strempel… - Nature …, 2023 - nature.com
A challenging task to understand health and disease-related microbiome signatures is to
move beyond descriptive community-level profiling towards disentangling microbial …
move beyond descriptive community-level profiling towards disentangling microbial …
Specialized metabolic functions of keystone taxa sustain soil microbiome stability
Background The relationship between biodiversity and soil microbiome stability remains
poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on …
poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on …
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Co-occurrence networks produced from microbial survey sequencing data are frequently
used to identify interactions between community members. While this approach has …
used to identify interactions between community members. While this approach has …
Abundance determines the functional role of bacterial phylotypes in complex communities
Bacterial communities are essential for the functioning of the Earth's ecosystems. A key
challenge is to quantify the functional roles of bacterial taxa in nature to understand how the …
challenge is to quantify the functional roles of bacterial taxa in nature to understand how the …
Next generation microbiome research: identification of keystone species in the metabolic regulation of host-gut microbiota interplay
The community of the diverse microorganisms residing in the gastrointestinal tract, known as
the gut microbiota, is exceedingly being studied for its impact on health and disease. This …
the gut microbiota, is exceedingly being studied for its impact on health and disease. This …