Sophisticated analysis and simplified visualization are crucial for understanding complicated
structures of biomacromolecules. DSSR (Dissecting the Spatial Structure of RNA) is an …

Abstract Web 3DNA (w3DNA) 2.0 is a significantly enhanced version of the widely used
w3DNA server for the analysis, visualization, and modeling of 3D nucleic-acid-containing …

We present a comprehensive software package, 3DNA, for the analysis, reconstruction and
visualization of three‐dimensional nucleic acid structures. Starting from a coordinate file in …

The inherent conformational flexibility of nucleic acids facilitates the formation of a range of
conformations such as duplex, triplex, quadruplex, etc. that play crucial roles in biological …

The w3DNA (web 3DNA) server is a user-friendly web-based interface to the 3DNA suite of
programs for the analysis, reconstruction, and visualization of three-dimensional (3D) …

We present a set of protocols showing how to use the 3DNA suite of programs to analyze,
rebuild and visualize three-dimensional nucleic-acid structures. The software determines a …

Creating clear, visually pleasing 2D depictions of RNA and DNA strands and their
interactions is important to facilitate and communicate insights related to nucleic acid …

Sophisticated and interactive visualizations are essential for making sense of the intricate
3D structures of macromolecules. For proteins, secondary structural components are …

Considerable progress has been made in the prediction methods of 3D structures of RNAs.
In contrast, no such methods are available for DNAs. The determination of 3D structures of …

The 3DNA software package is a popular and versatile bioinformatics tool with capabilities
to analyze, construct, and visualize three-dimensional nucleic acid structures. This article …