DRANetSplicer: A Splice Site Prediction Model Based on Deep Residual Attention Networks
X Liu, H Zhang, Y Zeng, X Zhu, L Zhu, J Fu - Genes, 2024 - mdpi.com
The precise identification of splice sites is essential for unraveling the structure and function
of genes, constituting a pivotal step in the gene annotation process. In this study, we …
of genes, constituting a pivotal step in the gene annotation process. In this study, we …
Splicescanner: An accurate and interpretable deep learning-based method for splice site prediction
R Wang, J Xu, X Huang, W Qi, Y Zhang - International Conference on …, 2023 - Springer
The identification of splice sites is significant to the delineation of gene structure and the
understanding of complicated alternative mechanisms underlying gene transcriptional …
understanding of complicated alternative mechanisms underlying gene transcriptional …
EnsembleSplice: ensemble deep learning model for splice site prediction
V Akpokiro, T Martin, O Oluwadare - BMC bioinformatics, 2022 - Springer
Background Identifying splice site regions is an important step in the genomic DNA
sequencing pipelines of biomedical and pharmaceutical research. Within this research …
sequencing pipelines of biomedical and pharmaceutical research. Within this research …
[HTML][HTML] Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA
Background The accurate identification of the exon/intron boundaries is critical for the
correct annotation of genes with multiple exons. Donor and acceptor splice sites (SS) …
correct annotation of genes with multiple exons. Donor and acceptor splice sites (SS) …
Edeepssp: explainable deep neural networks for exact splice sites prediction
Splice site prediction is crucial for understanding underlying gene regulation, gene function
for better genome annotation. Many computational methods exist for recognizing the splice …
for better genome annotation. Many computational methods exist for recognizing the splice …
SpliceCannon: A novel framework for the prediction of canonical and non-canonical splice sites based on deep learning
Y Zhang, W Qi, R Lin, J Fan - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
Accurately predicting splice sites in DNA sequences is not only of utmost importance in the
study of gene expression and protein synthesis, but also crucial to precisely understanding …
study of gene expression and protein synthesis, but also crucial to precisely understanding …
Deepss: Exploring splice site motif through convolutional neural network directly from dna sequence
Splice sites prediction and interpretation are crucial to the understanding of complicated
mechanisms underlying gene transcriptional regulation. Although existing computational …
mechanisms underlying gene transcriptional regulation. Although existing computational …
AttentionSplice: An Interpretable Multi‐Head Self‐Attention Based Hybrid Deep Learning Model in Splice Site Prediction
W YAN, B ZHANG, M ZUO, Q ZHANG… - Chinese Journal of …, 2022 - Wiley Online Library
Pre‐mRNA splicing is an essential procedure for gene transcription. Through the cutting of
introns and exons, the DNA sequence can be decoded into different proteins related to …
introns and exons, the DNA sequence can be decoded into different proteins related to …
SpliceRover: interpretable convolutional neural networks for improved splice site prediction
Motivation During the last decade, improvements in high-throughput sequencing have
generated a wealth of genomic data. Functionally interpreting these sequences and finding …
generated a wealth of genomic data. Functionally interpreting these sequences and finding …
[HTML][HTML] CNNSplice: Robust models for splice site prediction using convolutional neural networks
V Akpokiro, HMAM Chowdhury, S Olowofila… - Computational and …, 2023 - Elsevier
The identification of splice site, or segments of an RNA gene where noncoding and coding
sequences are connected in the 5′ and 3′ directions, is an essential post-transcriptional …
sequences are connected in the 5′ and 3′ directions, is an essential post-transcriptional …