SAR-Guided Scoring Function and Mutational Validation Reveal the Binding Mode of CGS-8216 at the α1+/γ2–Benzodiazepine Site
DCB Siebert, M Wieder, L Schlener… - Journal of Chemical …, 2018 - ACS Publications
The structural resolution of a bound ligand–receptor complex is a key asset to efficiently
drive lead optimization in drug design. However, structural resolution of many drug targets …
drive lead optimization in drug design. However, structural resolution of many drug targets …
[HTML][HTML] Structure-Guided Computational Methods Predict Multiple Distinct Binding Modes for Pyrazoloquinolinones in GABAA Receptors
J Fabjan, F Koniuszewski, B Schaar… - Frontiers in …, 2021 - frontiersin.org
Pyrazoloquinolinones (PQs) are a versatile class of GABAA receptor ligands. It has been
demonstrated that high functional selectivity for certain receptor subtypes can be obtained …
demonstrated that high functional selectivity for certain receptor subtypes can be obtained …
Structure-guided computational methods predict multiple distinct binding modes for pyrazoloquinolinones receptors in GABAA
J Fabjan, F Koniuszewski, B Schaar… - … Aspects of Ligand-gated …, 2022 - books.google.com
The WHO Model List of Essential Medicines contains many allosteric modulators of GABAA
receptors, among them several benzodiazepines and many sedative general anesthetics …
receptors, among them several benzodiazepines and many sedative general anesthetics …
Delta Score: Improving the Binding Assessment of Structure-Based Drug Design Methods
Structure-based drug design (SBDD) stands at the forefront of drug discovery, emphasizing
the creation of molecules that target specific binding pockets. Recent advances in this area …
the creation of molecules that target specific binding pockets. Recent advances in this area …
Fully flexible molecular alignment enables accurate ligand structure modelling
Accurate protein-ligand binding poses are the prerequisites of structure-based binding
affinity prediction, and also provide the structural basis for in depth lead optimization in small …
affinity prediction, and also provide the structural basis for in depth lead optimization in small …
Leveraging data fusion strategies in multireceptor lead optimization MM/GBSA end-point methods
JL Knight, G Krilov, KW Borrelli, J Williams… - Journal of chemical …, 2014 - ACS Publications
Accurate and efficient affinity calculations are critical to enhancing the contribution of in silico
modeling during the lead optimization phase of a drug discovery campaign. Here, we …
modeling during the lead optimization phase of a drug discovery campaign. Here, we …
Integration of ligand and structure based approaches for CSAR-2014
P Prathipati, K Mizuguchi - Journal of Chemical Information and …, 2016 - ACS Publications
The prediction of binding poses and affinities is an area of active interest in computer-aided
drug design (CADD). Given the documented limitations with either ligand or structure based …
drug design (CADD). Given the documented limitations with either ligand or structure based …
Current assessment of docking into GPCR crystal structures and homology models: successes, challenges, and guidelines
The growing availability of novel structures for several G protein-coupled receptors (GPCRs)
has provided new opportunities for structure-based drug design of ligands against this …
has provided new opportunities for structure-based drug design of ligands against this …
[HTML][HTML] Demystifying the Molecular Basis of Pyrazoloquinolinones Recognition at the Extracellular α1+/β3- Interface of the GABAA Receptor by Molecular Modeling
N Singh, BO Villoutreix - Frontiers in Pharmacology, 2020 - frontiersin.org
GABAA receptors are pentameric ligand-gated ion channels that serve as major inhibitory
neurotransmitter receptors in the mammalian brain and the target of numerous clinically …
neurotransmitter receptors in the mammalian brain and the target of numerous clinically …
[HTML][HTML] Structural features embedded in G protein-coupled receptor co-crystal structures are key to their success in virtual screening
Structure based drug discovery on GPCRs harness atomic detail X-ray binding pockets and
large libraries of potential drug lead candidates in virtual screening (VS) to identify novel …
large libraries of potential drug lead candidates in virtual screening (VS) to identify novel …