Recent Advances in Assembly of Complex Plant Genomes

W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …

[HTML][HTML] Building near-complete plant genomes

TP Michael, R VanBuren - Current Opinion in Plant Biology, 2020 - Elsevier
Highlights•Long read sequencing has improved genome assembly by an order of
magnitude.•New genome assembly algorithms leverage long, error prone reads to untangle …

Tools and strategies for long-read sequencing and de novo assembly of plant genomes

H Jung, C Winefield, A Bombarely, P Prentis… - Trends in plant …, 2019 - cell.com
The commercial release of third-generation sequencing technologies (TGSTs), giving long
and ultra-long sequencing reads, has stimulated the development of new tools for …

[HTML][HTML] Current challenges in de novo plant genome sequencing and assembly

MC Schatz, J Witkowski, WR McCombie - Genome biology, 2012 - Springer
Current challenges in de novo plant genome sequencing and assembly | Genome Biology
Skip to main content SpringerLink Account Menu Find a journal Publish with us Track your …

[HTML][HTML] The impact of third generation genomic technologies on plant genome assembly

WB Jiao, K Schneeberger - Current opinion in plant biology, 2017 - Elsevier
Highlights•Plant genomes are more repetitive and complicate to assemble than
vertebrates.•Long-read assembly contigs outperform short-read assembly scaffolds.•Long …

A guide to sequence your favorite plant genomes

FW Li, A Harkess - Applications in Plant Sciences, 2018 - Wiley Online Library
With the rapid development of sequencing technology and the plummeting cost, assembling
whole genomes from non‐model plants will soon become routine for plant systematists and …

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

B Pucker, I Irisarri, J de Vries, B Xu - Quantitative Plant Biology, 2022 - cambridge.org
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …

[HTML][HTML] De novo assembly of plant complete genomes

Y Zhou, J Zhang, X Xiong, ZM Cheng, F Chen - Tropical Plants, 2022 - maxapress.com
Plant genomes encode the mysteries of how plants cope with complex environments over
long evolutionary histories. Over the past 20 years, rapidly developing technologies have …

De novo sequencing of plant genomes using second-generation technologies

M Imelfort, D Edwards - Briefings in bioinformatics, 2009 - academic.oup.com
The ability to sequence the DNA of an organism has become one of the most important tools
in modern biological research. Until recently, the sequencing of even small model genomes …

Technology-enabled great leap in deciphering plant genomes

L Xie, X Gong, K Yang, Y Huang, S Zhang, L Shen… - Nature Plants, 2024 - nature.com
Plant genomes provide essential and vital basic resources for studying many aspects of
plant biology and applications (for example, breeding). From 2000 to 2020, 1,144 genomes …