Quantification of transcription noise's impact on cell fate commitment with digital resolutions

F Jiao, M Tang - Bioinformatics, 2022 - academic.oup.com
Motivation Gene transcription is a random and noisy process. Tremendous efforts in single-
cell studies have been mapping transcription noises to phenotypic variabilities between …

[HTML][HTML] Buffering and amplifying transcriptional noise during cell fate specification

EA Urban, RJ Johnston Jr - Frontiers in genetics, 2018 - frontiersin.org
The molecular processes that drive gene transcription are inherently noisy. This noise often
manifests in the form of transcriptional bursts, producing fluctuations in gene activity over …

[HTML][HTML] Modeling-based investigation of the effect of noise in cellular systems

D Gonze, C Gérard, B Wacquier, A Woller… - Frontiers in Molecular …, 2018 - frontiersin.org
Noise is pervasive in cellular biology and inevitably affects the dynamics of cellular
processes. Biological systems have developed regulatory mechanisms to ensure …

Phenotypic switching in gene regulatory networks

P Thomas, N Popović, R Grima - Proceedings of the …, 2014 - National Acad Sciences
Noise in gene expression can lead to reversible phenotypic switching. Several experimental
studies have shown that the abundance distributions of proteins in a population of isogenic …

Post‐transcriptional noise control

MMK Hansen, LS Weinberger - BioEssays, 2019 - Wiley Online Library
Recent evidence indicates that transcriptional bursts are intrinsically amplified by
messenger RNA cytoplasmic processing to generate large stochastic fluctuations in protein …

Silent transcription intervals and translational bursting lead to diverse phenotypic switching

X Yang, S Luo, Z Zhang, Z Wang, T Zhou… - Physical Chemistry …, 2022 - pubs.rsc.org
Gene-expression bimodality, as a potential mechanism generating phenotypic cell diversity,
can enhance the survival of cells in a fluctuating environment. Previous studies have shown …

Living with noisy genes: how cells function reliably with inherent variability in gene expression

N Maheshri, EK O'Shea - Annu. Rev. Biophys. Biomol. Struct., 2007 - annualreviews.org
Within a population of genetically identical cells there can be significant variation, or noise,
in gene expression. Yet even with this inherent variability, cells function reliably. This review …

[HTML][HTML] And the noise played on: stochastic gene expression and HIV-1 infection

WJ Blake, JJ Collins - Cell, 2005 - cell.com
Stochastic gene expression has been implicated in a variety of cellular processes, including
cell differentiation and disease. In this issue of Cell, Weinberger et al.(2005) take an …

[HTML][HTML] Genetic noise control via protein oligomerization

CM Ghim, E Almaas - BMC systems biology, 2008 - Springer
Background Gene expression in a cell entails random reaction events occurring over
disparate time scales. Thus, molecular noise that often results in phenotypic and population …

[HTML][HTML] Noise facilitates transcriptional control under dynamic inputs

RA Kellogg, S Tay - Cell, 2015 - cell.com
Cells must respond sensitively to time-varying inputs in complex signaling environments. To
understand how signaling networks process dynamic inputs into gene expression outputs …