Bioactive peptides play critical roles in regulating many biological processes. Recently,
natural short peptides biomarkers are drawing significant attention and are considered as …

Mass spectrometry (MS) is a technique widely employed for the identification and
characterization of proteins, personalized medicine, systems biology and biomedical …

Peptides play important roles in regulating biological processes and form the basis of a
multiplicity of therapeutic drugs. To date, only about 300 peptides in human have confirmed …

Peptides have attracted attention during the last decades due to their extraordinary
therapeutic properties. Different computational tools have been developed to take …

We present a flexible, user-friendly R package called protti for comprehensive quality
control, analysis and interpretation of quantitative bottom-up proteomics data. protti supports …

In recent years, the biological sciences have seen a surge in the development of methods,
including high-throughput global methods, for the quantitative measurement of biomolecule …

Background Computational methods based on initial screening and prediction of peptides
for desired functions have proven to be effective alternatives to lengthy and expensive …

Motivation Enzymatic digestion of proteins before mass spectrometry analysis is a key
process in metaproteomic workflows. Canonical metaproteomic data processing pipelines …

The adaptive immune response plays a vital role in eliminating infected and aberrant cells
from the body. This process hinges on the presentation of short peptides by major …

Characterizing the human leukocyte antigen (HLA) bound ligandome by mass spectrometry
(MS) holds great promise for developing vaccines and drugs for immune-oncology. Still, the …